Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1284 607 1e-168 seq1159 333 3e-86 seq104 114 2e-20 >seq1284 Length=72753 Score = 607 bits (672), Expect = 1e-168 Identities = 1262/1869 (68%), Gaps = 39/1869 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||||||||| | |||||||||||| | || ||| |||||||| ||||| || Sbjct 54605 GTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTTTTAAGT 54546 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | | ||| ||||||||||| || |||| ||| ||| |||| | |||| Sbjct 54545 CCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTGGCTACG 54486 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 | | ||| | |||||| |||||||||||||| || || | | || || |||||| Sbjct 54485 TAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGATTTATG 54426 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || | || ||||||||||| |||||||||| | || | ||| || || | Sbjct 54425 ATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCGTCAGG--GA 54368 Query 62235 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 |||| | || ||||| || || | || ||| || || ||| || || ||||| Sbjct 54367 TTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATTAAATCAT 54308 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||| | || ||||||||| |||| | | || ||||||| ||||| || || | Sbjct 54307 CCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGGAAATCCC 54248 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 |||| | |||||| || || |||||||| || || ||||| | || || ||||||| Sbjct 54247 CAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCGTTATTTC 54188 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | | ||||||||| ||||| || || ||||| || || | | |||| |||||| | | Sbjct 54187 CTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTTATTC 54128 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 ||| | | | ||||| ||||||| || ||||| ||| | ||| || || ||| Sbjct 54127 CGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGAGTAACAT 54068 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589 ||| | || || ||||| | || ||| || || || || Sbjct 54067 TCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTTTCATAAA 54008 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62649 || || || || |||| ||||||||| || ||||| ||||||||||||| ||||| | Sbjct 54007 CCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCGTTTCAA 53948 Query 62650 AGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAA 62709 |||| | | |||| | || ||||| |||||||||| || | | | ||||| Sbjct 53947 AGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCAAAATAA 53888 Query 62710 ACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTT 62769 | || || ||||||||||||| |||||| || || || | ||| | ||||| || ||| Sbjct 53887 AAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGGACGTTT 53828 Query 62770 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA---TTTCTGACAA 62826 |||||||||| | || |||||||||| ||| |||| |||||| | | ||| | |||| Sbjct 53827 CAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTGTTACAA 53768 Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATC---TATTACAA 62880 | | |||| | || | ||| ||||||||| | || || | | || | Sbjct 53767 CTTTTGTGACGA---TTTTTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTTAACGA 53711 Query 62881 ACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 62940 || ||| | |||| ||||| | ||||||||| || | |||| || | | |||| Sbjct 53710 ACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTGTATT 53651 Query 62941 GTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCT 63000 || || || ||||| | ||| |||| || || || ||||||| |||||| ||||| | Sbjct 53650 CAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTACTTT 53591 Query 63001 TTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 | ||||| || || ||||| | || ||||||| ||||||||||| ||||| | | Sbjct 53590 TGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGACACAA 53531 Query 63061 TAATCGCTTTCCAGACGACTCGAGCCTTTATT------ATAGATTTGTATCTCCTTTCTC 63114 | || |||||||| | ||| || |||| | | |||| | |||||| Sbjct 53530 TTATGGCTTTCCATAATTCTCTGGCGGGTATTTGGCGAACAAATTT---TTTCCTTT--- 53477 Query 63115 TTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 63174 ||||||| | || ||| |||| | || |||||| || || || |||| Sbjct 53476 TTTCGTAATTTTCGTATAATTCCACGAATTTTTCCCCCCAACAATCAGATAAACCGGGAC 53417 Query 63175 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63234 ||| || |||||||| | ||||||| | || |||| || ||||||||||| | || Sbjct 53416 ATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATAAAT 53357 Query 63235 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 63294 |||||||||| | ||| ||||| |||||| | ||| ||| || || ||||| | Sbjct 53356 CAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTATTTT 53297 Query 63295 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63354 |||| | || | || | | || ||| | |||||||||||| || || || || | Sbjct 53296 TTTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAAACG 53237 Query 63355 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63414 ||||||| | ||| || || || ||||| | |||| ||| || |||||| |||| | | Sbjct 53236 CTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCCGTA 53177 Query 63415 ACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG-GCA 63473 ||||||| | | ||||||||| |||||||| || || | ||| | | | | || || Sbjct 53176 ACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATA-ATCGTGCCTTGTGCT 53118 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 ||||||||| | | || ||||| || || |||| || || | || ||| || Sbjct 53117 CGAATATTATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATTGT 53058 Query 63534 TTTA-ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 | || | | | | || || | || ||| || ||| | | || ||||| Sbjct 53057 GAGATACAT-TTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACATGA 52999 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 |||||||| | ||| || | || |||||| || ||| ||||| ||||| | Sbjct 52998 CGACATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAAATA 52939 Query 63653 TTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATT 63710 || ||||| | ||| |||||| || ||||||||||| || || || || | ||||| Sbjct 52938 CTTCTCAGACATGTA-ATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCG-TGAATC 52881 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63770 || || || || ||||||||||| || || || | |||| | || || ||| ||||| Sbjct 52880 CCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTTTT 52821 Query 63771 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63830 | | || || ||| | ||||||||||||||||| || ||||| || || || ||| Sbjct 52820 AGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACGATCG 52761 Query 63831 TAAATAATA 63839 ||||| ||| Sbjct 52760 TAAATGATA 52752 >seq1159 Length=103958 Score = 333 bits (368), Expect = 3e-86 Identities = 628/916 (69%), Gaps = 12/916 (1%) Strand=Plus/Plus Query 32987 TATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAAT 33046 |||| ||||||| ||| || ||||||||| || || || ||| || || |||| Sbjct 49809 TATCATCTTGAGC---AACACCAGCTTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAAT 49865 Query 33047 TAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 33106 |||| || || |||||| | ||| |||||||| ||||| || ||| || | Sbjct 49866 TAGTACGCCCATCATCAGATATAAGATTCATAAAATCAAATGGATTAGTTGAATTGTATA 49925 Query 33107 tttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCA 33166 ||||| | | || | ||||| | || | ||| || || || || || || || Sbjct 49926 ATTTTTCACAACCAAGTTCAGTTAATAAACGATCGGCAACAAACTCAATGTACTGCGACA 49985 Query 33167 TCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTT 33226 | | | |||||||| || || | |||| |||||||| |||| | |||||| |||| Sbjct 49986 TTAAATTGCAATTCATCCCGATTAAACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTT 50045 Query 33227 CAATGGATACCGCATCTGTTATAATAGATC--TAACGGTTTCTTCACTCGGTGGATGCAA 33284 |||| |||||||| |||||| || || ||| ||| ||| || || Sbjct 50046 CAATTTCAACCGCATCGCGAATAATAC-TCGTTATACGTTCCTTTGA-CGGCTTTTG-AA 50102 Query 33285 TAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 33343 ||| || | |||||| ||||| || || ||| | || | ||| || || | ||||| Sbjct 50103 TAAGATATGTAAACAATAAACAAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTA 50162 Query 33344 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 ||| || |||||||| | |||||||||| || |||||||| | |||||| || | | Sbjct 50163 ATTCATTAGAAAACGTTAAACCGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTG 50222 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 | || ||| |||||||| || || || || || ||||| |||| | | || ||| Sbjct 50223 CAAAACTTCCCGAAAAGAAAATACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAA 50282 Query 33464 AACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 33520 || ||| | | | ||||| ||| ||||||||| || |||||||| ||||||| Sbjct 50283 AAGTCGCGTTTTTACTACTAATCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAG 50342 Query 33521 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 33580 | | |||||| ||||| ||||| | | | | ||||| || ||| || |||||| | Sbjct 50343 GAAGCGTTTCGATGGCGTTAAATAAAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTT 50402 Query 33581 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33640 | || || | || |||||||| || ||||| |||||||| || || ||||| ||||| | Sbjct 50403 CAATTAACATGCTGTACATTTCAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAA 50462 Query 33641 AACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCA 33700 |||| | || || || | ||| |||||| || ||| ||||| | |||||||| || | Sbjct 50463 AACAACGTGCTTCCGTTACCTGAACTTCTTGACTAAAACGTTCAACTAAATTTTCGTTTA 50522 Query 33701 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33760 | ||||| ||| || |||||||| || || ||||| ||||||| ||||| Sbjct 50523 CAATTCCATCAGAAGCAGCAAAAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTAT 50582 Query 33761 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 |||| | | | ||||| ||||| |||||| || | |||||||||||| ||||||| Sbjct 50583 CGGTTAATGTTTGCCAATGATTGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAA 50642 Query 33821 ATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAA 33880 |||| || || |||| ||| || | ||| || ||| ||| | || || |||| | Sbjct 50643 ATGAAGCTTCCGCCTGTTTGTATTTCGCCCAAATATCAGGATACTCAATGGGAAAAACGA 50702 Query 33881 CAAATCTATTTGGATT 33896 | || | ||||||| Sbjct 50703 CGAAACGTCTTGGATT 50718 >seq104 Length=333490 Score = 114 bits (126), Expect = 2e-20 Identities = 280/405 (69%), Gaps = 31/405 (8%) Strand=Plus/Plus Query 157218 TATGGTAAAGGAGCAAAGGGTGGTATCATGGCAGTCTTTCTAATGGGTTGTTACGA-CGA 157276 ||||||| || ||| ||||| || ||| | | |||||||||||||||||||| | | Sbjct 112952 TATGGTACTGGTAAAAAAGGTGGAATGATGTCGATTTTTCTAATGGGTTGTTACGATCCA 113011 Query 157277 TGAATCCGGTAAATGGAAG-ACGGTTACCAAGTGTTCA----GGACACGATGATAATACG 157331 |||| | || | || ||||||||| ||||| |||||||||||||| || Sbjct 113012 --AATCGTGATTATTTTTGTACTGTTACCAAG-GTTCATACAGGACACGATGATAAAACA 113068 Query 157332 TTA--AGGGTTTTGCAAGACCAATTAACGATG-GTTAAAATTAACAAG-GATCCCaaaaa 157387 ||| | || || ||| | || | |||| | ||||| ||| | ||| ||| || Sbjct 113069 TTAGAACGGCTT--CAAAATGAACT--CGATATGATAAAAATAAGTGGAGATATCAATAA 113124 Query 157388 aaTTCCAGAGTGGTTG-GTAGTTAATAAAATCTAT-ATTCCCGATTTTGTAGTAGAGGAT 157445 ||| || | ||||| || || | ||| | || || |||||||| |||| | | || Sbjct 113125 AATACCTAAATGGTTACGTTGT--ACGAAAACAATGATCCCCGATTTAGTAGCAAAAGAC 113182 Query 157446 CCGAAA---CAATCTCAGATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCC--AAGT 157500 || ||| ||| || | ||||||||| | || || || || || || | |||| Sbjct 113183 CCCAAAAACCAACCTG---TTTGGGAAATTACGGGCGCGGAATTCAC-TCAACACGAAGT 113238 Query 157501 CCCATACCGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATA 157560 | | |||||||||||||| || ||| | || || || |||| | |||| ||||||| | Sbjct 113239 TC-ACACCGCAAATGGAATTTCAATTCGTTTCCCAAGGGTTACAAAGATTCGAGAAGAAA 113297 Query 157561 AAACGTGGAAAGAATCTACTCATCTAAACGATTTAGTAAACTTGA 157605 | || |||||||| | ||| || |||| || |||| ||| |||| Sbjct 113298 AGACTTGGAAAGAGGCAACTAATTTAAATGAATTAGAAAAATTGA 113342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622892092533320