Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq412 114 1e-20 seq241 114 1e-20 seq1284 91.5 1e-13 seq569 87.8 2e-12 >seq412 Length=275653 Score = 114 bits (126), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 23986 ACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| ||||| | ||||| ||||| |||||||| || | || || | || |||||| Sbjct 82783 ACAAATATGCAGATCTTTGTTAAAACTTTAACTGGCAAGACCATAACTCTTGAGGTCGAG 82842 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | ||| |||||||| | ||||| ||||| |||||||| || || || || Sbjct 82843 CCTTCCGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCG 82902 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||||||| | | |||| || || || ||||||||||||| | | | ||| Sbjct 82903 GATCAACAGCGTTTAATTTTCGCGGGAAAACAACTCGAAGATGGGCGCACTCTTTCTGAT 82962 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| |||||||| || | |||||||| |||||||| | || || Sbjct 82963 TATAATATTCAGAAAGAATCAACGTTGCATTTAGTCCTAAGATTGCGTGGTGG 83015 >seq241 Length=949647 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| |||||||| ||||||||| | ||||| | ||||| ||| ||| Sbjct 166049 AATGCAGATCTTTGTCAAAACATTGACTGGAAAAACTATTACTTTGGAAGTTGAG-CCAT 166107 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || ||||| || | || ||| || || || |||||||| || ||||| |||| Sbjct 166108 CTGATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGATC 166167 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| || | || | | || || ||| | ||||| | | | | ||||| | Sbjct 166168 AACAACGATTAATCTTTGCTGGTAAACAATTAGAAGACGGACGCACTCTTTCTGATTACA 166227 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| ||||||||||| || | ||||| ||||| ||||||||||||||| Sbjct 166228 ACATCCAAAAAGAATCAACCCTCCATTTGGTGTTGAGATTGAGAGGAGGA 166277 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || ||||||||| | ||||| | ||||| ||| ||| Sbjct 167189 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTTGAG-CCAT 167247 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || ||||| ||| | || ||| || || ||||| ||||| || || || |||| Sbjct 167248 CTGATACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATC 167307 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| | |||| | || ||| || ||||| ||||||| | | | ||||| | Sbjct 167308 AACAACGTTTGATCTTCGCCGGTAAACAACTTGAAGATGGTCGTACTCTTTCTGATTACA 167367 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| ||||||||||| || | |||||||| || || || ||||| ||| Sbjct 167368 ACATCCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGA 167417 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||| ||| | || || | |||||||| | Sbjct 166277 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCATC 166336 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || ||| ||||| || || ||||| || || || ||||| Sbjct 166337 CGACACCATTGAAAATGTTAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCA 166396 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || | || | | || || ||| | ||||||| | | | ||||| || Sbjct 166397 ACAACGATTAATCTTTGCTGGTAAACAATTAGAAGATGGGCGCACTCTTTCTGATTACAA 166456 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || |||||||| || |||||||||| || ||||||||||||||| Sbjct 166457 CATCCAGAAAGAATCCACCCTTCATTTAGTATTGAGATTGAGAGGAGGA 166505 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||||||||||||||||||| | || ||| | ||||| || | Sbjct 167417 AATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCCTAGAAGTGGAACCTTC 167476 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| || || ||||| ||||| || || || ||||| Sbjct 167477 TGATACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167536 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | | || | || ||| || ||| | ||||||| | | | ||||| || Sbjct 167537 ACAACGTTTAATCTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAA 167596 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||||||||| || | |||||||| || || || ||||| ||| Sbjct 167597 CATTCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGA 167645 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || |||||||| ||| | || || | |||||||| | Sbjct 166505 AATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCTTC 166564 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || || || |||||||| || || || || || Sbjct 166565 TGATACTATTGAAAACGTTAAAGCTAAAATCCAGGATAAAGAAGGGATCCCACCAGACCA 166624 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168 ||| | | || | || ||| || ||||| ||||||| || | | | | ||||||| Sbjct 166625 ACAACGTTTAATCTTCGCCGGTAAACAACTTGAAGATGGACGTACTCTTTCG-GATTATA 166683 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||||||||| || | ||||||||||| |||||| |||| || Sbjct 166684 ACATCCAAAAAGAATCCACCCTCCATTTAGTGTTGAGATTGCGAGGTGG 166732 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || ||||||||| | ||||| | ||||| ||| ||| Sbjct 166961 AATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACTATTACTTTAGAAGTTGAG-CCAT 167019 Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 | || ||||| || | || ||| || || || || ||||| || ||||| |||| Sbjct 167020 CTGATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAGGAAGGAATTCCTCCAGATC 167079 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||| | | || | || ||| || ||||| ||||||| | | | ||||| | Sbjct 167080 AACAACGTTTAATCTTCGCCGGTAAACAACTTGAAGATGGGCGCACTCTTTCTGATTACA 167139 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || ||||| |||||||| | || || || || ||||||||||| ||| Sbjct 167140 ATATCCAAAAGGAATCTACTCTCCACTTGGTATTGAGATTGAGAGGTGGA 167189 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || |||||||| | ||||| | ||||| ||| | Sbjct 165821 AATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACTATTACATTGGAAGTTGAGCCATC 165880 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | || ||| |||||| || || ||||| || || || ||||| Sbjct 165881 CGACACCATAGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCA 165940 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | || || ||| | ||||||| | | | ||||| || Sbjct 165941 ACAACGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACTCTTTCTGATTACAA 166000 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| ||||| || ||||||| || || ||||||||||| ||| Sbjct 166001 TATCCAAAAGGAATCAACTCTTCATTTGGTATTGAGATTGAGAGGTGGA 166049 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||||||||||||||||||| | || ||| | ||||| || | Sbjct 167645 AATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCTTAGAAGTGGAACCTTC 167704 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || || ||||| ||||| || || || ||||| Sbjct 167705 TGATACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 167764 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| || || || ||| | ||||||| | | | | ||||| || Sbjct 167765 ACAGCGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTTTCAGATTACAA 167824 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || | |||||||| Sbjct 167825 TATCCAAAAGGAATCCACTCTGCATTTAGT 167854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || ||||| || ||| | || ||| | ||||| || | Sbjct 166734 ATGCAAATTTTTGTTAAGACCTTAACCGGTAAAACCATCACCTTGGAAGTTGAACCTTCT 166793 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||| || |||||||| || ||||| |||||| Sbjct 166794 GATACAATTGAAAATGTTAAAGCTAAGATCCAGGATAAAGAAGGAATTCCTCCAGATCAA 166853 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | | || | | || || ||||| ||||||| | | | || || ||| Sbjct 166854 CAACGTTTAATCTTTGCTGGTAAACAACTTGAAGATGGGCGTACTCTTTCTGACTACAAC 166913 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||||||||| || | |||||||| || ||||||||||| ||| Sbjct 166914 ATCCAAAAAGAATCAACTCTCCATTTAGTATTGAGATTGAGAGGTGGA 166961 >seq1284 Length=72753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 187/275 (68%), Gaps = 5/275 (2%) Strand=Plus/Minus Query 133001 TCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACAC 133060 |||||| ||||||||||| | | |||| ||| || | || || ||||||||||| Sbjct 53474 TCGTAATTTTCGTATAATTCCACGAATTTTTCCCCCCAACAATCAGATAAACCGGGACAT 53415 Query 133061 TCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTC-ACCCTTTTCATGAACAACGA 133119 | | ||||||||| | ||||| || || | ||| || | |||||| || || Sbjct 53414 TGATGAGGACACATTAGCGACCACATTGAATCTTC-CTCGACGCGTTTCATAAATAAATC 53356 Query 133120 AGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCG 133179 ||| |||| | ||| |||||||||| | ||| | | ||||| || || ||||| Sbjct 53355 AGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTATTTTT 53296 Query 133180 TTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGC 133239 ||| || | |||||| || || || |||||||| || || | ||| | || || || Sbjct 53295 TTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAAACGC 53236 Query 133240 GCC---TTTCCTTTTACCTCCCTGATCCACATGTC 133271 || | | | ||||| || ||||| |||| || Sbjct 53235 TCCAGGTCTTTTATTACCCCCTTGATCGACATATC 53201 >seq569 Length=200630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || ||||| |||| || ||| | || ||| |||| || || || Sbjct 134392 AATGCAAATTTTCGTGAAAACCCTAACCGGTAAAACCATCACCCTCGAGGTTGAACCCTC 134451 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| |||||||| | ||||| ||| || ||||| || || || || || ||||| Sbjct 134452 CGATACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAGGGTATCCCACCAGATCA 134511 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | | || | || || || ||||| ||||||| | | | ||| || || Sbjct 134512 ACAACGTTTAATCTTCGCTGGTAAACAACTGGAAGATGGACGCACTCTTTCCGACTACAA 134571 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||| ||||| || |||| || ||||| Sbjct 134572 CATTCAAAAGGAATCGACGCTTCACTTGGTGTT 134604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429898917616935