Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq241 159 2e-34 seq533 140 2e-28 seq1264 131 1e-25 seq569 122 6e-23 seq454 122 6e-23 seq1873 118 7e-22 seq2749 111 1e-19 seq1688 104 2e-17 >seq241 Length=949647 Score = 159 bits (176), Expect = 2e-34 Identities = 179/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| ||||| | ||| ||||| || ||||| |||||||| |||||||||| Sbjct 165824 CATT-CCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAAT 165766 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | |||| | || |||||||||||||||||||| || | |||||||| || | Sbjct 165765 CGGAAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTG 165706 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| || ||||||||| ||||| ||||||||| | | ||| || | Sbjct 165705 GTGGGATCCCCTCTTTGTCCTGGATTTTCGCCTTCACATTTTCAATAGTGTCAGATGGCT 165646 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || ||||| || || |||||||| ||||||||||||||||| |||||||| | ||| Sbjct 165645 CGACCTCTAACGTGATGGTTTTACCAGTCAAGGTTTTCACGAAAATCTGCATCTGTTA 165588 Score = 154 bits (170), Expect = 1e-32 Identities = 174/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| |||||||||||||| |||||||| |||||||||| Sbjct 166052 CATT-CCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAAT 165994 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| | || || ||||||||||| ||||| || | ||||||||||| | Sbjct 165993 CAGAAAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTG 165934 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || ||| || || ||||| | | || || | Sbjct 165933 GTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCT 165874 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| ||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 165873 CAACTTCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822 Score = 145 bits (160), Expect = 5e-30 Identities = 172/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | |||||||||||| || || || ||||| || ||||||| Sbjct 166280 CATT-CCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAAT 166222 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| |||| ||||||||||| || ||||| |||| ||||||||||| | Sbjct 166221 CAGAAAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTG 166162 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| ||| ||||| || ||||| | | ||||| | Sbjct 166161 GAGGAATTCCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCT 166102 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || ||||||||||| || ||||| ||||| || || |||||||| Sbjct 166101 CAACTTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050 Score = 136 bits (150), Expect = 3e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| ||||| || ||||| |||||||| |||||||||| Sbjct 167192 CATT-CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAAT 167134 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || | || || | |||||| ||||| || |||| ||||||||||| | Sbjct 167133 CAGAAAGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTG 167074 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| || ||| ||||| || ||||| | | ||||| | Sbjct 167073 GAGGAATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCT 167014 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| ||||||||||| || ||||| ||||| || || |||||||| Sbjct 167013 CAACTTCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 Score = 127 bits (140), Expect = 1e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| || | ||| || ||||| || || || ||||| || ||||||| Sbjct 167420 CATT-CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAAT 167362 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| | || || | |||||| ||||| || || | ||||||||||| | Sbjct 167361 CAGAAAGAGTACGACCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTG 167302 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||||| || ||||||| | ||||| | Sbjct 167301 GTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTATCAGATGGCT 167242 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| |||||||||||||| || ||||| ||||| || || |||||||| Sbjct 167241 CAACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190 Score = 127 bits (140), Expect = 1e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| || | ||| || ||||| || || || |||||||| ||||||| Sbjct 167648 CATT-CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAAT 167590 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| | || ||||||||||| ||||| || |||| ||||||||||| | Sbjct 167589 CAGAAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTG 167530 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| ||||| || ||||| | | ||||| | || Sbjct 167529 GTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTT 167470 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||||| || || ||||| || || || ||||| ||||| || ||||| Sbjct 167469 CCACTTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || ||||| ||||| || ||||| || ||||| | Sbjct 166964 CATT-CCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGT 166906 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | ||| | || || | |||||| || ||||| |||| ||||||||||| | Sbjct 166905 CAGAAAGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTG 166846 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | |||||||| ||| || || || ||||| | | ||||| | || Sbjct 166845 GAGGAATTCCTTCTTTATCCTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAAGGTT 166786 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| || || || |||||||| || ||||| || || || || ||||| Sbjct 166785 CAACTTCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || ||||| |||||| |||||||| ||||||||||| || | |||| | || || Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 |||||||| || || || || | || |||||||| | |||| ||||| ||||| Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | | |||||| | ||| |||||||| || || ||||| Sbjct 167734 ATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTTT 167675 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| ||||| || ||||| Sbjct 167674 CCAGTTAATGTTTTTACGAAGATTTGCAT 167646 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | ||| || |||||||| ||| || || || || ||||||| Sbjct 166508 CATT-CCTCCTCTCAATCTCAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAAT 166450 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | || | || ||||||||||| || ||||| |||| ||||||||||| | Sbjct 166449 CAGAAAGAGTGCGCCCATCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTG 166390 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || || || || ||||| | | || || || Sbjct 166389 GTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTT 166330 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| ||||| || |||||||| || ||||| || || || || ||||| Sbjct 166329 CGACTTCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166278 >seq533 Length=64277 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 31556 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 31615 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 31616 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 31650 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 39730 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 39789 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 39790 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 39824 Score = 120 bits (132), Expect = 2e-22 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 41982 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 42041 Query 20007 GGTAATATTTAGCCTT 20022 || ||||||||||| Sbjct 42042 GGCCGTATTTAGCCTT 42057 >seq1264 Length=37017 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||| ||||| || |||||||| Sbjct 18720 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGGTAGGGACAGCGGGAATCTCGT 18661 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 18660 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 18626 >seq569 Length=200630 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 134619 CCACCACGAAGACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAA 134560 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | |||||| || || || |||| ||||||||||| | ||| Sbjct 134559 AGAGTGCGTCCATCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGG 134500 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| |||||| ||| ||||| | || ||||| |||||| Sbjct 134499 ATACCCTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACC 134440 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || |||||||| || | |||||||||||| || ||||| Sbjct 134439 TCGAGGGTGATGGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCAT 134393 >seq454 Length=77727 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||| | ||| || |||||||| Sbjct 70432 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGGTGGGGATAGCGGGAATCTCGT 70373 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 70372 TAATCCATTCATGCTCGTCACTAATTAGATGACGA 70338 >seq1873 Length=17552 Score = 118 bits (130), Expect = 7e-22 Identities = 76/83 (92%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 4129 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 4070 Query 25969 GCGCGTCACTAATTAGATGACGA 25991 ||||||||||||||||||||||| Sbjct 4069 GCGCGTCACTAATTAGATGACGA 4047 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 12075 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 12016 Query 20007 GGTAATATTTAGCCTT 20022 || |||||||||||| Sbjct 12015 CGT-ATATTTAGCCTT 12001 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| | Sbjct 15496 CTCTCTCGTCAGAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATTAGTCCCTT 15437 Query 20007 GGTAATATTTAGCCTT 20022 || |||||||||||| Sbjct 15436 CGT-ATATTTAGCCTT 15422 >seq2749 Length=6404 Score = 111 bits (122), Expect = 1e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | Sbjct 5988 CTCTCTCTTCAAAGTTCTTTGCAATTTTCCCTCACGGTACTTGTTCGCTATCGGTCTTGT 6047 Query 20007 GGTAATATTTAGCCTT 20022 ||| ||||||||||| Sbjct 6048 GGTCGTATTTAGCCTT 6063 >seq1688 Length=11477 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| Sbjct 5801 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGAATTCGC 5742 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 5741 GTCTATATTTAGCCTTA 5725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334918310489987