Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq405 89.7 4e-13 >seq1 Length=3368518 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 69543 tttttCTTTTACCGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAGACCATTTATTCG 69602 || ||||||||||||||| ||| || ||| | || || || ||||| || |||||| Sbjct 2423050 TTCTTCTTTTACCGAGAAACGGCGGTTGAGTACATAAATTGTGGAAAAGTAATATATTCG 2422991 Query 69603 AGAGTCGCTCGTGTCTGCAAAAATGATCACGGCGGCCCACATCGGTACTCG-GATAAATG 69661 | || || | || || || ||||| | || || || | | | ||| || ||||| Sbjct 2422990 CGCGTGGCGAGGGTTTGTAAGGATGATAAAGGTGGGCCGCGGCAATT-TCGTGAGAAATG 2422932 Query 69662 GACGTCATTTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAATTCCCCTTTTACTT 69721 |||||| ||||| ||| || || |||||||||| || || || |||| ||||| || || Sbjct 2422931 GACGTCGTTTTTGAAGGCTAGATTAAATTGTTCAGTTCCTGGAGAATATCCCTTCTATTT 2422872 Query 69722 TGACGA 69727 ||| || Sbjct 2422871 TGATGA 2422866 >seq405 Length=75446 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/179 (72%), Gaps = 10/179 (6%) Strand=Plus/Minus Query 69555 CGAGAAGTGGCCGTCGAGCATATTAACTGCGGAAAGACCATTTATTCGAGAGTCGCTCGT 69614 || |||| || || || | || || |||||||| | || |||||| || ||||| | Sbjct 10197 CGCGAAGCAGCTGTTGAATACATAAATTGCGGAAAAGCAATCTATTCGCGAATCGCTAGA 10138 Query 69615 GTCTGCAAAAATGATCACGGCGGCCCACATCGGTACT-CG----GATAAATGGACGTCAT 69669 || || ||||||||| |||| || | || |||| || ||||| |||||| | | Sbjct 10137 GTTTGTAAAAATGATAACGGAGGT--AAAT---TACTTCGAAGAGATAATTGGACGACGT 10083 Query 69670 TTTTAAAGACTCGACTAAATTGTTCGGTGCCCGGCGAATTCCCCTTTTACTTTGACGAA 69728 || ||||| |||| ||||||||||| | ||||| || | ||| ||||| || ||||| Sbjct 10082 TTCTAAAGGCTCGTTTAAATTGTTCGATACCCGGGGAGTACCCTTTTTATTTCAACGAA 10024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408207988641272