Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq569 131 2e-25 seq241 118 1e-21 seq1284 82.4 7e-11 >seq569 Length=200630 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | ||| || || |||||||| ||||| ||| Sbjct 134619 CCACCACGAAGACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAA 134560 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || ||||| |||||| |||| || || || ||||| || || Sbjct 134559 AGAGTGCGTCCATCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGG 134500 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| |||||| ||||| | ||||| ||| || | || || Sbjct 134499 ATACCCTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACC 134440 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 |||| ||| | ||||| ||||| || ||||| || ||||| ||||| || Sbjct 134439 TCGAGGGTGATGGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCATTGC 134390 >seq241 Length=949647 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | |||| ||| ||||| || | ||||| || ||||| ||||||||||| Sbjct 167189 TCCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGA 167130 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || ||||| || ||| |||| || || || ||||| ||||| Sbjct 167129 AAGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGG 167070 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| |||||| || | | ||| | ||| || | ||| || Sbjct 167069 AATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 167010 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || |||| |||||| |||||||||||||| Sbjct 167009 TTCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | |||| ||| ||||| || | || || || ||||| |||||||||||| Sbjct 165821 TCCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGGA 165762 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| |||| |||||||| || ||||||| || || || || || || Sbjct 165761 AAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTGG 165702 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| |||||| ||||||| ||| | | ||| | ||||| | |||||| Sbjct 165701 GATCCCCTCTTTGTCCTGGATTTTCGCCTTCACATTTTCAATAGTGTCAGATGGCTCGAC 165642 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || |||| ||||| || ||||||||||| Sbjct 165641 CTCTAACGTGATGGTTTTACCAGTCAAGGTTTTCACGAAAATCTGCAT 165594 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| |||||||||||| | || || |||||||| || |||||||| | ||||| Sbjct 166267 AATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGT 166208 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 || |||| ||||| ||||| |||| ||||| || ||||| ||||| || || || Sbjct 166207 CCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGGAATTCCTTCT 166148 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || ||| |||||| || | | ||| | ||| || | ||| ||||| | || Sbjct 166147 TTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACTTCCAAAGTA 166088 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| || |||| ||||| ||||| |||||||| Sbjct 166087 ATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | ||| | ||| || ||||| | || || ||||||||||| |||||||| Sbjct 167645 TCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGA 167586 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| |||| ||||| || ||| |||| || || || ||||| || || Sbjct 167585 AAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGG 167526 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||| || | | ||| | ||| || | | || || Sbjct 167525 GATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCAC 167466 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || | |||||||| || || ||||| Sbjct 167465 TTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | |||| ||| |||||||| | || || || ||||| ||||||||||| Sbjct 166049 TCCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGA 165990 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | ||||||||||| ||||||| || || ||||| || || Sbjct 165989 AAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 165930 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| | | ||| | | || || | | ||| | |||||| | ||| | Sbjct 165929 GATTCCTTCCTTAT-CTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCAA 165871 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | || || || |||| |||||| || || |||||||| Sbjct 165870 CTTCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| || | || ||||| | || || || ||||| ||||||||||| Sbjct 167873 TCCACCACGTAGGCGAAGAACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGA 167814 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | ||||| |||||| | ||||| ||||| ||||| || || Sbjct 167813 AAGGGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGG 167754 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| |||||| || | | ||| | || || | | || || Sbjct 167753 GATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCAC 167694 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| || || | |||||||| || || ||||| Sbjct 167693 TTCTAAGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167646 >seq1284 Length=72753 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 145720 TCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTC 145779 ||||||||||| || | | |||||| || ||||| || | | ||| ||||| || || Sbjct 54611 TCGACGGTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCTGTT 54552 Query 145780 TTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTTCG 145839 || || || |||| |||||| || || | | || ||||| || |||| | Sbjct 54551 TTAAGTCCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGTTTG 54492 Query 145840 GCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATG 145899 || || | | ||||| ||||||||| ||||| ||||||| | || | ||||| Sbjct 54491 GCTACGTAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCTTGA 54432 Query 145900 TCTATCATGCACTTTGATTT--AATTTCCCATGCGGTTTTA 145938 | ||| ||||| || |||| ||||||||| | |||||| Sbjct 54431 TTTATGATGCA--TTTATTTGAAATTTCCCAAACTGTTTTA 54393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475458736010480