Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq241 107 1e-18 seq569 105 4e-18 seq412 87.8 1e-12 >seq241 Length=949647 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| |||||||| ||||| |||||||| | || ||| || || || || || || | Sbjct 165822 TTCCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGG 165763 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| | ||| |||| || | |||||||||||||| || | ||||| |||||| | | Sbjct 165762 AAAGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTG 165703 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | |||||| ||||| || ||| || || | | || | ||| | ||| | Sbjct 165702 GGATCCCCTCTTTGTCCTGGATTTTCGCCTTCACATTTTCAATAGTGTCAGATGGCTCGA 165643 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || || | || ||||| || |||||||| Sbjct 165642 CCTCTAACGTGATGGTTTTACCAGTCAAGGTTTTCACGAAAATCTGCAT 165594 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||| ||||| ||||| |||| || ||| || || || || || || | Sbjct 166050 TTCCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAG 165991 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | ||| |||| |||| |||||||| ||||| || | ||||| || ||| | | Sbjct 165990 AAAGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTG 165931 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || ||||| || |||||| ||| || | |||| | || | ||||| Sbjct 165930 GGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCAA 165871 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || | ||| || || ||||||||||| Sbjct 165870 CTTCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| ||||| ||||| || | || |||||| || ||||| || || | Sbjct 166278 TTCCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAG 166219 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | ||| | || || | ||||| || ||||| |||| |||||| || ||| | | Sbjct 166218 AAAGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAG 166159 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || || || ||| || | | || | ||| | ||||| Sbjct 166158 GAATTCCTTCTTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAA 166099 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || |||||||| || | || || |||||||||||||| Sbjct 166098 CTTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || || |||||||| || || || | || |||||| || ||||| || || | Sbjct 167418 TTCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAG 167359 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || || ||||| ||||| || || | ||||| || ||| | | Sbjct 167358 AAAGAGTACGACCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGTG 167299 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| || || ||| || || || || | ||| | ||| Sbjct 167298 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTAAC--ATTCTCAATGGTATCAGATGGCTC 167241 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || || |||||||| || | ||| || |||||||||||||| Sbjct 167240 AACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || || |||||||| || || || | || |||||| |||||||| || || | Sbjct 167646 TTCCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAG 167587 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || | ||||| ||||| || |||| ||||| || ||| | | Sbjct 167586 AAAGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTG 167527 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || || ||| || | | || | ||| | || | Sbjct 167526 GGATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCA 167467 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||||||||| || | || || || ||||| ||||| Sbjct 167466 CTTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 >seq569 Length=200630 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || ||| || |||||||| ||||| ||||| | ||| |||| Sbjct 134605 CAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGTCCATC 134546 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| ||||| || || || |||| ||||| || ||| | || | ||||||||||| Sbjct 134545 TTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGGATACCCTCCTTGTC 134486 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || ||||| | | || | || || ||||| |||| ||| ||||| Sbjct 134485 TTGGATTTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAACCTCGAGGGTGATGGT 134426 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || || || ||||| || || ||||| Sbjct 134425 TTTACCGGTTAGGGTTTTCACGAAAATTTGCAT 134393 >seq412 Length=275653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| ||||| || ||||| | || |||| || || |||||||| || || Sbjct 82980 TTCTTTCTGAATATTATAATCAGAAAGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAA 82921 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 |||| || || || || | || | ||||| ||||| ||||| ||||| Sbjct 82920 AATTAAACGCTGTTGATCCGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATT 82861 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | ||| || || | |||||||| || || || | ||| || || Sbjct 82860 TTCGATGGTATCGGAAGGCTCGACCTCAAGAGTTATGGTCTTGCCAGTTAAAGTTTTAAC 82801 Query 34970 AAAGATCTGCATATTCGTAGA 34990 ||||||||||||||| || || Sbjct 82800 AAAGATCTGCATATTTGTGGA 82780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324605600047656