Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1284 553 2e-152 seq1159 419 3e-112 >seq1284 Length=72753 Score = 553 bits (612), Expect = 2e-152 Identities = 1255/1892 (66%), Gaps = 27/1892 (1%) Strand=Plus/Minus Query 46964 TAATTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATA 47023 ||||||| ||| || || || || | ||| || | | || | ||| |||| |||||| Sbjct 54624 TAATTTGCTTTTATCGACGGTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATA 54565 Query 47024 ATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGA 47083 |||||| || || || | ||| | ||| || || ||||| || ||||| || Sbjct 54564 ATACATTCCTGTTTTAAGTCCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGA 54505 Query 47084 ATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT 47143 ||| | |||| | | | || ||| | |||||| || ||||| || || || |||| Sbjct 54504 GTAAGTCGGTTTGGCTACGTAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCG 54445 Query 47144 ATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTG 47203 | | || || || || || | | || || ||||| |||||||||||||||| Sbjct 54444 AGCCGCGGCTTGATTTATGATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTC 54385 Query 47204 TTTAATGTCTTCTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataatttt 47260 ||| | || || |||| | | | |||||||| || || | ||| | || |||| Sbjct 54384 TTTTAAATCGTCAGGGATTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTG 54325 Query 47261 gttttt---taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGG 47317 ||||| ||| |||| |||||| | ||| ||||| | |||| | || | Sbjct 54324 ATTTTTCATTAAATCATC---CCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTG 54268 Query 47318 ATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGG 47377 |||||||| ||| || || ||||| |||||||| || |||| ||||| ||| || || Sbjct 54267 ATTAACAACTTGGAAATCCCCAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGG 54208 Query 47378 TTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 ||| | |||||| |||||||| | ||||||||| ||||| ||||| ||||| | || | Sbjct 54207 TTCAAAAGATTCGTTATTTCCTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAA 54148 Query 47438 TAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCA 47497 | ||| |||||||| ||| | ||| | || | |||||||||||| Sbjct 54147 GAGTAAAGAATTTCTTATTCCGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCA 54088 Query 47498 AAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGA 47557 | ||| |||||| ||||||||| | ||| ||||| | ||||||||||| | || || Sbjct 54087 TAAATCAGATGGAGTAACATTCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGA 54028 Query 47558 ACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGC 47617 ||| | || |||| |||| |||| | || || | ||||||||| ||||| || || Sbjct 54027 ACCTTGGTAAGTTTCATAAACCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGC 53968 Query 47618 ACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAA 47677 || ||||| | |||||||| |||| | ||||| || ||||| | ||||| Sbjct 53967 ACCGTAATAAAGCGTTTCAAAGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATCAAA 53908 Query 47678 AGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCT 47737 || || | |||||| |||||||||| |||||| ||||| || | Sbjct 53907 GGGGAGTCTCATCAAAATAAAAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCG 53848 Query 47738 ATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTT 47797 ||| |||||| || ||||||||||| | ||| || | || | ||| |||| ||| Sbjct 53847 ATGGCGTTTATTGGACGTTTCAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTT 53788 Query 47798 ATTTAGA---NNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA--- 47851 ||||| | || |||| ||||||| | ||||||||| Sbjct 53787 ATTTAAATTTTTTGTTACAACTTTTGTGACGATTT---TTAATTTTTCAAAATCAAAACT 53731 Query 47852 ---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTAC 47908 | ||| | |||| ||| |||| || || ||||||| |||||| || || | Sbjct 53730 TTTCCTGTCGGGTTTAACGAACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGAT 53671 Query 47909 CTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACC 47968 |||| ||| || |||| || ||||| | |||| ||| | || ||| || ||||| Sbjct 53670 TTCATCAGGAGATGTGTATTCAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACC 53611 Query 47969 CAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCC 48028 |||| ||| || ||| | ||||| ||||| || || | |||| | || ||||| Sbjct 53610 TAAATGTTGTTGGTTACTTTTGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCC 53551 Query 48029 AGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTC-CTAGCCTTTATAACAGCTC 48087 |||||| || ||||| |||| || | |||||| | | || || || ||| Sbjct 53550 AGTTTCAATTTGAGACACAATTATGGCTTTCCATA-ATTCTCTGGCGGGTATTTGGCGAA 53492 Query 48088 TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT 48147 | ||| || | |||||| || ||||| | | | |||| ||||| | || Sbjct 53491 CAAATTTTTTCCTTTTTTCGTAATTTTCGTATAATTCCACGAATTTTTCCCCCCAACAAT 53432 Query 48148 TATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTC 48207 | ||| || ||||||| || ||||||||| | ||||| ||| | | || | Sbjct 53431 CAGATAAACCGGGACATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGC 53372 Query 48208 TAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTT 48267 ||||||||| ||| || ||||| | ||| ||||||||| || | || | ||||| Sbjct 53371 GTTTCATAAATAAATCAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTT 53312 Query 48268 CATTGCCACTA-TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCT 48326 || ||| || || |||||| || || ||| || | | ||| |||||||| |||||| Sbjct 53311 CAGCCCCAGTATTTTTTTTTAAATTTAA-AAAATCAACAACATCCGCATGCCACGGTTCT 53253 Query 48327 AAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTA 48386 ||||| ||||| | | || |||| ||||||||| |||||||| | ||||| || ||| Sbjct 53252 AAATAAATTGCAAACGCTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTA 53193 Query 48387 TTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATA 48446 || ||| |||| | ||||||||| || | ||| ||||| |||||||| ||||| | |||| Sbjct 53192 TTATTAAAAACCCGTAACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATA 53133 Query 48447 TAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 | || |||| |||||| | || || || || || || |||| ||| Sbjct 53132 ATCGTGCCTTGTGCTCGAATATTATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGAT 53073 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 || | |||||| || | | | |||| |||| || ||| || ||| || Sbjct 53072 ATAATAGCACATTGTGAGATACATTTAAAAATGCCTTGGATTGAATCCTCCGGCATCATT 53013 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626 | || ||||| |||||||| || || || ||| |||||| || ||| Sbjct 53012 ACTAAGAAACATGACGACATTTGTGGGCGAGGTGTCGCTGCGGCAAATAAAGTCGGACTC 52953 Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC- 48685 || ||| |||| | ||||| || | | || || ||||||||| | || || || || Sbjct 52952 GCGTGAGTAAAATACTTCTCAGACATGTAATTGTAAGTTTCAATAGCTGATTCAATGTCT 52893 Query 48686 CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 || | || || || | | || ||||||||||||| ||| || | |||| ||||||| Sbjct 52892 TCACCG-TGAATCCCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTT 52834 Query 48746 GTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGA 48805 || ||||| | |||||||| ||| | |||||||||||||||||| || ||||| Sbjct 52833 TCCGTTGATTTTTAGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGA 52774 Query 48806 AAAGTCGTTATCATTAATAATTGATGAATTTA 48837 || || ||| | ||| || | ||||||| Sbjct 52773 GAAATCACGATCGTAAATGATACAAGAATTTA 52742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 ||| || ||||||||||| ||||||| |||| ||||||||||| | | | |||||||| Sbjct 43452 TTTCTTCGTTTCTTTATGGAGATTAGTCATAGCAATTCTAGCAGCAAGTGTTGCATAATC 43393 Query 48986 TGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGT 49045 ||||| ||| | |||| || |||| || ||||| | || || || || Sbjct 43392 AGGATGGTCTGTAATTTTTGTAGCAGCGGTTTCAGCAGCTAAGGTGTCCAACTCAACTGT 43333 Query 49046 AGTTACACCTGTATATATTCCTTGAATAACTTTCAT 49081 || || |||| ||| | ||||||||||| ||||| Sbjct 43332 GGTAACGCCTGGATAAAGACCTTGAATAACCTTCAT 43297 >seq1159 Length=103958 Score = 419 bits (464), Expect = 3e-112 Identities = 649/923 (70%), Gaps = 14/923 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||| || || |||| |||| |||||||||||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 | |||||||||||||||||| || ||| |||| ||||| | || | ||| || Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 18789 TAGTCTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTA 18847 || | ||| || ||||| | ||| || || | ||| | || |||||||| || |||| Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGA-CATTAAATTGCAATTCATCCCGATTA 50009 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | |||| || || ||||| || | |||||| ||||| || | || || || |||| Sbjct 50010 AACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAA 50069 Query 18908 TA---GATACAACTCTATCTTCATTAGGAGGGTATAGAA---GATGTTTAAACATCAAAC 18961 || | || || ||| || | || | | ||| ||| | |||||| |||| Sbjct 50070 TACTCGTTA------TACGTTCCTTTGACGGCTTTTGAATAAGATATGTAAACAATAAAC 50123 Query 18962 ATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAAC 19021 | ||||| || |||||| || || || | || |||||||||||||| ||||||| Sbjct 50124 AAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAAC 50183 Query 19022 CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATA 19081 | ||||| | || | ||||| ||||| || |||| ||||| ||| |||||||| | Sbjct 50184 CGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAA 50243 Query 19082 TACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 |||| || || || ||||||||||||| | ||| ||| || | || | ||| || || Sbjct 50244 TACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAA 50303 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 |||| || | ||||||||||| |||||||| ||||| || | || || || | |||| Sbjct 50304 TCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAA 50363 Query 19202 ATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 ||| | | | | || ||| || ||| | || || || | |||||||||| Sbjct 50364 ATAAAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTT 50423 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || ||||||||||| ||||| || ||||| ||||||||||| | |||||| |||| || Sbjct 50424 CAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCT 50483 Query 19322 GTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 | ||||| || ||| | ||| || |||||||| || || ||||||||| ||| |||| Sbjct 50484 GAACTTCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAA 50543 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCAT 19441 |||| ||||| ||||| |||||||| ||| | ||||||||| | ||||| || Sbjct 50544 AAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAATGTTTGCCAATGAT 50603 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | | |||||| || | ||||||||||||| |||||||| ||||| || || | ||| | Sbjct 50604 TGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGT 50663 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTT 19561 | | ||| |||||| |||| | || ||||| | || || | || ||| || Sbjct 50664 ATTTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAAACGTCTTGGATTATCAC 50723 Query 19562 TAAGAATAGGTTCCATTTTTTGA 19584 ||| | |||||| |||||| || Sbjct 50724 GAAGTAAAGGTTCAATTTTTGGA 50746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562059074450280