Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq241 116 3e-21
>seq241
Length=949647
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || |||| || ||| || ||||| || || |||||||| || |||||||||||
Sbjct 167416 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 167357
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| | || || | || |||||||| || |||| || |||||||| | ||
Sbjct 167356 AGAGTACGACCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 167297
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| || || ||| ||| | | | || || | ||| ||
Sbjct 167296 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTATCAGATGGCTCAACT 167237
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 167236 TCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||||||||| || || |||||||| || ||||||||||| ||| | || ||||
Sbjct 166262 CAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAAAGAGTGCGTCCGTC 166203
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || || ||||| ||||| || | ||| |||||||| | |||| || || || ||
Sbjct 166202 TTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATC 166143
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|| || ||| ||| | | | || || | ||| || |||| ||||| ||
Sbjct 166142 CTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACTTCCAAAGTAATAGT 166083
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||| ||||| ||||| ||||||||
Sbjct 166082 TTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| |||||||| || || || ||||| |||||||||||||| ||| | || | ||
Sbjct 166034 CAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGAAAGAGTACGTCCATC 165975
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
||||| || || || ||||| |||| || |||||||| | || | || ||||| ||
Sbjct 165974 TTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATC 165915
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| ||| ||| | | | || || | ||| || |||| ||||| ||
Sbjct 165914 TTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGCTCAACTTCCAATGTAATAGT 165855
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||||||||| || || ||||||||
Sbjct 165854 CTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| ||||| || || || || ||||| |||||||||||||| ||| | || | ||
Sbjct 167174 CAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAAAGAGTGCGCCCATC 167115
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| | || |||||||| || || | || |||||||| | |||| || ||||| ||
Sbjct 167114 TTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATTCCTTCCTTATC 167055
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|| || ||| ||| | | | || || | ||| || || | ||||| ||
Sbjct 167054 CTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACTTCTAAAGTAATAGT 166995
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||||||||| ||||||||||||||
Sbjct 166994 TTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || |||| || ||| || ||||| || || ||||||||||| |||||||||||
Sbjct 167644 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAA 167585
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| | || || || || |||||||| || || | || |||||||| | ||
Sbjct 167584 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGG 167525
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| || || ||| ||| | | | || || | |||||
Sbjct 167524 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCACT 167465
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || |||||||| || || |||||||| || || |||||
Sbjct 167464 TCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| | | ||| ||||| || || || || ||||| ||||||||||| ||
Sbjct 165820 CCACCCCTCAATCTCAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGGAA 165761
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGG 48658
|| | || | || || || || || |||||||| |||| || ||||| || |||||
Sbjct 165760 AGGGTACGTCCATCTTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTGGG 165701
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| | ||||| ||||| || || || ||| | | || || || | ||| ||
Sbjct 165700 ATC-CCCTCTTTGTCCTGGATTTTCGCCTTCACATTTTCAATAGTGTCAGATGGCTCGAC 165642
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
||| | ||| || ||||| || ||||| ||||| || ||||||||||||
Sbjct 165641 CTCTAACGTGATGGTTTTACCAGTCAAGGTTTTCACGAAAATCTGCATC 165593
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | || ||||| || ||| || ||||| ||||||||||| ||
Sbjct 167872 CCACCACGTAGGCGAAGAACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAA 167813
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || ||||| || ||||| || || |||| ||||||||||| | ||
Sbjct 167812 AGGGTACGTCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGG 167753
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| || || ||| ||| | | || || || | |||||
Sbjct 167752 ATTCCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACT 167693
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || |||||||| || || |||||||| || || |||||
Sbjct 167692 TCTAAGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167646
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| || ||||| || ||| ||||| || || ||||||||||| ||| | || | ||
Sbjct 166490 CAATACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGCCCATC 166431
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || || ||||| ||||| || | ||| |||||||| | || | || ||||| ||
Sbjct 166430 TTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGTGGGATTCCTTCCTTATC 166371
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| ||| ||| | | | || || | || || |||| || || ||
Sbjct 166370 TTGGATCTTAGCTTTAACATTTTCAATGGTGTCGGATGGTTCGACTTCCAATGTGATGGT 166311
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| || || || || || |||||||| |||||
Sbjct 166310 TTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380904743774871
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |