Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq78 138 1e-27 >seq78 Length=1060011 Score = 138 bits (152), Expect = 1e-27 Identities = 458/699 (66%), Gaps = 24/699 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | || || || ||||| ||||| ||||| || || || |||||| Sbjct 59999 ACACCAATAGGACCCATTCCTGGGCCACCACCACCATGAGGAATGCAAAACGTTTTATGT 59940 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||| |||| ||||||| || || |||| ||| | || || || || ||| Sbjct 59939 AAATTTAAATGAGATACATCGCTTCCGTAATCACCAGGTCTGCATAATCCAACTTGAGCA 59880 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTT--ACATA 138360 || | || |||||||| | ||| || ||||| || || ||||||| || || | | | Sbjct 59879 TTCATGTTAGCACCATCTAAATAAACTTGACCGCCGTTTTCATGAATAATTTTGCAGACA 59820 Query 138361 TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420 |||| | ||||| |||||| || || | ||| ||||| ||||| ||||| | || | Sbjct 59819 TCTG-CAACTGTTT-CTTCAAAAACTCCGTTAGTTGATGGGTATGTTATCATTAAGCAAG 59762 Query 138421 A-----GAG-TTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGT 138474 | ||| || ||| | ||| |||||||| | || ||| | || || Sbjct 59761 ATAAACGAGATTGGAAT-TTTTC-----TGCTTTCTCTTTTAAATCGGCAACATCAATTG 59708 Query 138475 TGCCAT-CATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCA 138533 |||| ||| | || || || | | || |||||| ||||| ||||| || Sbjct 59707 ATCCATCCATTTTTAC-TTTAACCGCCTCCACACGCATTCCAGCCATTTGAGCACTCGCC 59649 Query 138534 GGATTAGTTCCATGTGCTGACT--CTGGTATCAGACATACATTTCTTTTATCATCTCCTG 138591 |||||||| ||||| || ||| ||||| | || |||| ||| | || |||| Sbjct 59648 GGATTAGTACCATGCGC--ACTAATAGGTATTAAGCAAACATCTCTATCTGGATTTCCTT 59591 Query 138592 ATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGT 138651 ||| |||||| ||| || || || ||||| || || || || | || || Sbjct 59590 GCGCTTCATGATAACATTGTATGGCGCGAAGCCCTGCGTATTCTCCTTGAGCACCACTGT 59531 Query 138652 TAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCAT 138711 ||||||| || || |||| | ||||| || |||||||| ||| | | || Sbjct 59530 TAGGTTGGAAACTAATTTTATCATACCCTGTAATCTCACATAAATCTTTTTCAAGCTCCG 59471 Query 138712 CTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGG-CA 138770 | | || | |||||||| | || ||| | ||||| |||||| | | || | Sbjct 59470 CAAACATTTGGTGATAACCTTTCGTTTGTTCAAGAGGTGCGAATGGATGTAATTCGGTGA 59411 Query 138771 AATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTA 138830 ||| | | | |||| |||||||| ||| | | | || | |||||| |||||| Sbjct 59410 AATGCCT-CAATGAGCAAGGCATCATTTCAGTGGTAGAGTTCAATTTCATGGTGCAAGAT 59352 Query 138831 CCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 || | ||| | ||| || ||||| || | ||||||| Sbjct 59351 CCCAATGGTATCATGGAATGAACTAAAGAAATATCTTTA 59313 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 139863 GCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTA 139922 ||||| || ||||| || ||||||||||| ||| || ||||||| | | | || || Sbjct 58301 GCCTCAGCGGCTGCTGTACTTTCATCTAATAAAGAGGCATTTGCTACTTGAAGACCAGTC 58242 Query 139923 AGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCA 139982 | ||| | | | ||||||||||| | | | || |||| ||| |||| || ||| Sbjct 58241 AATTCAGAAACCATAGTTTGGTAATTTAGAAGTCCCTCTAATCGTCCTTGAGCAATTTCA 58182 Query 139983 GCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAA 140028 | ||||| |||||||| |||| ||||| |||||| |||| || Sbjct 58181 GGCTGATAAGGAGTGTATTGTGTGGTCCAACCAGGATTTTCAAAAA 58136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578947180354040