Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1159 145 2e-29
seq531 125 2e-23
seq8 98.7 3e-15
>seq1159
Length=103958
Score = 145 bits (160), Expect = 2e-29
Identities = 462/702 (66%), Gaps = 36/702 (5%)
Strand=Plus/Minus
Query 133103 GAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGAT 133162
|| |||||| || || ||| | | ||| || ||||||||| | |||||||||
Sbjct 50679 GATATTTGGGCGAAATACAAACAGGCGGAAGCTTCATTTTGGACCACTGAAGAAGTAGAT 50620
Query 133163 TTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCT 133222
| || ||||| | || ||| || | | || | | ||| |||||||| ||
Sbjct 50619 CTTTCGAAAGATCTCAATCATTGGCAAACATTAACCGATAACGAACGTCATTTTATCTCC 50560
Query 133223 -ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACG 133281
||| ||||||| ||||||||||| |||||| ||||| |||||||||| |||
Sbjct 50559 CATG-TTTTAGCCTTTTTTGCTGCTTCTGATGGAATTGTAAACGAAAATTTAGTTGAACG 50501
Query 133282 GTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGAT 133341
|||| ||||||||| | | ||||| ||| ||||| || | || ||||| ||
Sbjct 50500 TTTTAGTCAAGAAGTTCAGGTAACGGAAGCACGTTGTTTTTACGGTTTTCAAATTGCTAT 50441
Query 133342 GGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGT 133401
|||||||| || ||| | || | ||||||| ||||| || ||| |
Sbjct 50440 TGAAAATATTCACTCTGAAATGTACAGCATGTTAATTGAAACTTATATTTCTGATCCAAA 50381
Query 133402 CCAGAAGCACAAACTATTCAACGCCATTAGCGAAT---TTCCTTGTATTAAAAAGAAATC 133458
|| || | |||| |||||||| |||| |||||||| ||||||||||| |
Sbjct 50380 ACAAAAAGAATTTTTATTTAACGCCAT---CGAAACGCTTCCTTGTGTTAAAAAGAAAGC 50324
Query 133459 TGACTGGGCTATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516
||| |||||| | || ||||| || | || | |||| ||||| ||| | |||
Sbjct 50323 TGATTGGGCTTTAAATTGGATTAGTAGTAAAAAC--GCGACTTTTGGGGAACGTTTAGTT 50266
Query 133517 GCTTTTGCTGTAGTAGAGGGCAttt--ttttCAGTGGTGCGTTCTGC-TCTATTTTTTGG 133573
|||||||| | || ||||| |||| ||||| || ||| ||| |||||||||||
Sbjct 50265 GCTTTTGCGGCCGTTGAGGGTATTTTCTTTTC---GGGAAGTTTTGCAGCTATTTTTTGG 50209
Query 133574 CTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGAC 133633
| |||||||| ||| | | || || | |||||||| ||| | ||||| | ||
Sbjct 50208 TTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTAATGAATTAATTTCGCGCGAT 50149
Query 133634 GAGGCACTTCACACCGAATTTGC-CGTTT-TACTTCAC---TCTAAATTAGAGCGACCAC 133688
|| | | || ||||||||| |||| | || || ||| | | | | | |
Sbjct 50148 GAAGGTTTACATTACGAATTTGCTTGTTTATTGTTTACATATCTTATTCAAA---AGCCG 50092
Query 133689 TCAA---AAAGAATAA-GATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAA 133744
|||| || | |||| || | |||||| | || |||||||||||||| |||
Sbjct 50091 TCAAAGGAACGTATAACGAGT------ATTATTCGCGATGCGGTTGAAATTGAACAGGAA 50038
Query 133745 TTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAAT 133786
||| | | | |||||| ||| ||||||| || ||||||
Sbjct 50037 TTTTTAACTGATGCTCTTCCGGTTAGTTTAATCGGGATGAAT 49996
>seq531
Length=395284
Score = 125 bits (138), Expect = 2e-23
Identities = 195/279 (70%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| | |||||| || || || ||||| ||||| ||||| ||| | ||||||
Sbjct 181176 CATAACGGATTCCATGGCTTTTATCAATCGACGTTGAATGTAACCTGTTTCGGCTGTTTT 181235
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
||||||||||||||||| ||| |||||||||||||||| ||||| | | ||| ||
Sbjct 181236 TACAGCTGTATCAATTAAACCTTCACGACCACCCATAGCGTGGAAATAAAATTCTGATGG 181295
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
| || ||| | | | | ||| | |||||||| || | | || || | ||||
Sbjct 181296 TGTTAACCCGGCTAAATATGAGTTTTCAACGAAGCCTCTTGATTCAGGACCGTAGTCGTC 181355
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|| |||| || || || ||||| || | | || | || || || || || |||||
Sbjct 181356 TTTAATAAAATGAGGAAGCGTCCTTTTACGAAATCCAAACGGAATTCGTTTACCTTCAAC 181415
Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||| || || |||| ||| | ||| | |||||||||||
Sbjct 181416 GTTTTGTTGCCCCACGCAAGCAATAACTTGCGAAATATT 181454
>seq8
Length=4764940
Score = 98.7 bits (108), Expect = 3e-15
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
||| |||| |||||||| |||||||| ||||| || || || || || ||| | |
Sbjct 3178292 TGGCCGATTGTCATACGCGATGGAATAGCGTGGGGGTTAATTATAATATCAGGTGTTAAA 3178233
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAG-TTCCCTTTTG 251957
|| || ||| || |||||||| | || || ||| ||| ||| | || |||| |||||
Sbjct 3178232 CCTTCGCAAGTAAACGGCATATCTTCTTG-TCGATATTGTATCCCACAGGTTCCTTTTTG 3178174
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017
||||||||||||| || ||||||||||| ||| ||||| |||| ||||
Sbjct 3178173 TCCGTGACGAGAAGCAAATTTATCACCAATTTGGGGAATTCGAACTGATCGAACACGAAT 3178114
Query 252018 CTTACAGAAGTTGTAACCATC 252038
||||| || || ||||| ||
Sbjct 3178113 TTTACAAAATTTATAACCCTC 3178093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471684144318949
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |