Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1159 145 2e-29 seq531 125 2e-23 seq8 98.7 3e-15 >seq1159 Length=103958 Score = 145 bits (160), Expect = 2e-29 Identities = 462/702 (66%), Gaps = 36/702 (5%) Strand=Plus/Minus Query 133103 GAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGAT 133162 || |||||| || || ||| | | ||| || ||||||||| | ||||||||| Sbjct 50679 GATATTTGGGCGAAATACAAACAGGCGGAAGCTTCATTTTGGACCACTGAAGAAGTAGAT 50620 Query 133163 TTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTTCT 133222 | || ||||| | || ||| || | | || | | ||| |||||||| || Sbjct 50619 CTTTCGAAAGATCTCAATCATTGGCAAACATTAACCGATAACGAACGTCATTTTATCTCC 50560 Query 133223 -ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACG 133281 ||| ||||||| ||||||||||| |||||| ||||| |||||||||| ||| Sbjct 50559 CATG-TTTTAGCCTTTTTTGCTGCTTCTGATGGAATTGTAAACGAAAATTTAGTTGAACG 50501 Query 133282 GTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGAT 133341 |||| ||||||||| | | ||||| ||| ||||| || | || ||||| || Sbjct 50500 TTTTAGTCAAGAAGTTCAGGTAACGGAAGCACGTTGTTTTTACGGTTTTCAAATTGCTAT 50441 Query 133342 GGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGT 133401 |||||||| || ||| | || | ||||||| ||||| || ||| | Sbjct 50440 TGAAAATATTCACTCTGAAATGTACAGCATGTTAATTGAAACTTATATTTCTGATCCAAA 50381 Query 133402 CCAGAAGCACAAACTATTCAACGCCATTAGCGAAT---TTCCTTGTATTAAAAAGAAATC 133458 || || | |||| |||||||| |||| |||||||| ||||||||||| | Sbjct 50380 ACAAAAAGAATTTTTATTTAACGCCAT---CGAAACGCTTCCTTGTGTTAAAAAGAAAGC 50324 Query 133459 TGACTGGGCTATTAAATGGAT--CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516 ||| |||||| | || ||||| || | || | |||| ||||| ||| | ||| Sbjct 50323 TGATTGGGCTTTAAATTGGATTAGTAGTAAAAAC--GCGACTTTTGGGGAACGTTTAGTT 50266 Query 133517 GCTTTTGCTGTAGTAGAGGGCAttt--ttttCAGTGGTGCGTTCTGC-TCTATTTTTTGG 133573 |||||||| | || ||||| |||| ||||| || ||| ||| ||||||||||| Sbjct 50265 GCTTTTGCGGCCGTTGAGGGTATTTTCTTTTC---GGGAAGTTTTGCAGCTATTTTTTGG 50209 Query 133574 CTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGAC 133633 | |||||||| ||| | | || || | |||||||| ||| | ||||| | || Sbjct 50208 TTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTAATGAATTAATTTCGCGCGAT 50149 Query 133634 GAGGCACTTCACACCGAATTTGC-CGTTT-TACTTCAC---TCTAAATTAGAGCGACCAC 133688 || | | || ||||||||| |||| | || || ||| | | | | | | Sbjct 50148 GAAGGTTTACATTACGAATTTGCTTGTTTATTGTTTACATATCTTATTCAAA---AGCCG 50092 Query 133689 TCAA---AAAGAATAA-GATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAA 133744 |||| || | |||| || | |||||| | || |||||||||||||| ||| Sbjct 50091 TCAAAGGAACGTATAACGAGT------ATTATTCGCGATGCGGTTGAAATTGAACAGGAA 50038 Query 133745 TTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAAT 133786 ||| | | | |||||| ||| ||||||| || |||||| Sbjct 50037 TTTTTAACTGATGCTCTTCCGGTTAGTTTAATCGGGATGAAT 49996 >seq531 Length=395284 Score = 125 bits (138), Expect = 2e-23 Identities = 195/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| | |||||| || || || ||||| ||||| ||||| ||| | |||||| Sbjct 181176 CATAACGGATTCCATGGCTTTTATCAATCGACGTTGAATGTAACCTGTTTCGGCTGTTTT 181235 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||||||||||||||| ||| |||||||||||||||| ||||| | | ||| || Sbjct 181236 TACAGCTGTATCAATTAAACCTTCACGACCACCCATAGCGTGGAAATAAAATTCTGATGG 181295 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || ||| | | | | ||| | |||||||| || | | || || | |||| Sbjct 181296 TGTTAACCCGGCTAAATATGAGTTTTCAACGAAGCCTCTTGATTCAGGACCGTAGTCGTC 181355 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || |||| || || || ||||| || | | || | || || || || || ||||| Sbjct 181356 TTTAATAAAATGAGGAAGCGTCCTTTTACGAAATCCAAACGGAATTCGTTTACCTTCAAC 181415 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || || |||| ||| | ||| | ||||||||||| Sbjct 181416 GTTTTGTTGCCCCACGCAAGCAATAACTTGCGAAATATT 181454 >seq8 Length=4764940 Score = 98.7 bits (108), Expect = 3e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| |||| |||||||| |||||||| ||||| || || || || || ||| | | Sbjct 3178292 TGGCCGATTGTCATACGCGATGGAATAGCGTGGGGGTTAATTATAATATCAGGTGTTAAA 3178233 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAG-TTCCCTTTTG 251957 || || ||| || |||||||| | || || ||| ||| ||| | || |||| ||||| Sbjct 3178232 CCTTCGCAAGTAAACGGCATATCTTCTTG-TCGATATTGTATCCCACAGGTTCCTTTTTG 3178174 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAAC 252017 ||||||||||||| || ||||||||||| ||| ||||| |||| |||| Sbjct 3178173 TCCGTGACGAGAAGCAAATTTATCACCAATTTGGGGAATTCGAACTGATCGAACACGAAT 3178114 Query 252018 CTTACAGAAGTTGTAACCATC 252038 ||||| || || ||||| || Sbjct 3178113 TTTACAAAATTTATAACCCTC 3178093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471684144318949