Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq295 96.9 4e-15 seq236 86.0 8e-12 >seq295 Length=373786 Score = 96.9 bits (106), Expect = 4e-15 Identities = 288/438 (66%), Gaps = 25/438 (6%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTA--AATGATATAGG 172456 |||||||||||||| | |||| ||| || | | ||| | ||| || || | | | Sbjct 5331 AAGAACTTTTATGGTTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATG 5390 Query 172457 TGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGA 172516 || || |||||||| || | | | |||| |||||| | | || || ||||| Sbjct 5391 TG--AATATTTGGAATCCCAACAGCACCAGGGAATATTTAGACTCAATTGGTTTAACTGA 5448 Query 172517 AAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCA 172576 | ||||||| ||||| || || |||||||| ||||||||||||||| || ||| | Sbjct 5449 TCGTGAAGAAGGCGATTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGA 5508 Query 172577 ATATATCGACTGTG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTA 172635 |||| | | || | || ||||| || |||| | || ||||||| | || Sbjct 5509 ATAT-GGTAATATGCACACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTA 5567 Query 172636 TTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTAC 172695 |||||||| | |||| || ||| | ||||||| | || | ||||| || Sbjct 5568 TTAATACTATTAAAAATAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGA----AC 5623 Query 172696 CTCAACTTGA------TAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATG 172749 | || |||| |||||||| | |||||||| ||| ||||| |||||||||| Sbjct 5624 CCCA--TTGATATCCCTAAAATGGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATG 5681 Query 172750 T--CAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATT 172807 | | ||| | | | || |||| ||||||||| | ||||| ||| | || | Sbjct 5682 TAGCCGAAGGAGAACTTTC-----TTGTTTATTATATCAACGTTCAGCGGATATGGGTCT 5736 Query 172808 GGGGGTACCTTATAATAT 172825 || || |||| |||||| Sbjct 5737 TGGAGTTCCTTTTAATAT 5754 >seq236 Length=660955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116815 TAGTaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATT 116874 || ||| ||||||| |||||| |||||||||||||| |||||||||||||| ||||| Sbjct 652593 TAATAAGAAAAATGTTGTTATCATGGGTCGAAAAACTTGGGATAGTATTCCACCTAAATA 652652 Query 116875 TAAACCATTaaaaaa 116889 ||||||||||| || Sbjct 652653 CAAACCATTAAATAA 652667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632433648388760