Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq295 89.7 6e-13 seq236 86.0 8e-12 >seq295 Length=373786 Score = 89.7 bits (98), Expect = 6e-13 Identities = 286/440 (65%), Gaps = 23/440 (5%) Strand=Plus/Plus Query 171608 TTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTA--AATGATAT 171665 || |||||||||||||| | |||| ||| || | | ||| | ||| || || | Sbjct 5328 TTGAAGAACTTTTATGGTTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAA 5387 Query 171666 AGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTAC 171725 | ||| || |||||||| || | | | |||| |||||| | | || || || Sbjct 5388 ATGTG--AATATTTGGAATCCCAACAGCACCAGGGAATATTTAGACTCAATTGGTTTAAC 5445 Query 171726 TGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGC 171785 ||| | ||||||| ||||| || || |||||||| ||||||||||||||| || || Sbjct 5446 TGATCGTGAAGAAGGCGATTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGC 5505 Query 171786 TCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAAC 171845 | ||||| | | || ||||| || |||| | || ||||||| | Sbjct 5506 TGAATATGGTAATATGCACACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGT 5565 Query 171846 TATTAATACTTTACAAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGTTGGAATGT 171905 |||||||||| | |||| || ||| | ||||||| | || | ||||| Sbjct 5566 TATTAATACTATTAAAAATAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGA---- 5621 Query 171906 ACCTCAACTTGA------TAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTA 171959 ||| || |||| |||||||| | |||||||| || ||||| |||||||| Sbjct 5622 ACCCCA--TTGATATCCCTAAAATGGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTA 5679 Query 171960 TGT--CAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGA 172017 ||| | ||| | | | || |||| ||||||||| | ||||| ||| | || Sbjct 5680 TGTAGCCGAAGGAGAACTTTC-----TTGTTTATTATATCAACGTTCAGCGGATATGGGT 5734 Query 172018 TTGGGGGTACCTTATAATAT 172037 | || || |||| |||||| Sbjct 5735 CTTGGAGTTCCTTTTAATAT 5754 >seq236 Length=660955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 116998 TAGTaaaaaaaaTGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATT 117057 || ||| ||||||| |||||| |||||||||||||| |||||||||||||| ||||| Sbjct 652593 TAATAAGAAAAATGTTGTTATCATGGGTCGAAAAACTTGGGATAGTATTCCACCTAAATA 652652 Query 117058 TAAACCATTAAAAAA 117072 ||||||||||| || Sbjct 652653 CAAACCATTAAATAA 652667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628475598558720