Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq1284 266 8e-66
seq295 122 2e-22
seq531 113 1e-19
>seq1284
Length=72753
Score = 266 bits (294), Expect = 8e-66
Identities = 582/864 (67%), Gaps = 21/864 (2%)
Strand=Plus/Plus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||||||||| ||||| || |||||| | ||| | || |||| || | || |
Sbjct 52783 TATTTTGGTTTTAAAACACTCGAACGTTCATATCTCCTAAAAATCAACGGAAAAATTGCT 52842
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|||||||| ||||| ||||| | || || || |||| ||||| || | || ||| ||
Sbjct 52843 GAACGTCCCCAACATATGTTAATGCGCGTGGCCGTTGGGATTCACGGTGAAGACATTGAA 52902
Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483
| | ||||||| ||| || | | | ||| | || ||| || | ||| ||
Sbjct 52903 TCAGCTATTGAAACTTACAATTACATGTCTGAGAAGTATTTTACTCACGCGAGTCCGACT 52962
Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543
||||| ||||| || | | |||| || | || || |||||| || ||| |
Sbjct 52963 TTATTTGCCGCAGCGACACCTCGCCCACAAATGTCGTCATG-TTTCTT--AGTAATGATG 53019
Query 110544 ---GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600
|| ||||| || |||| |||| | | | | | || |||| |||| || |||
Sbjct 53020 CCGGAGGATTCAATCCAAGGCATTTTTAAATGTATCTCACAATGTGCTATTATATCAAAA 53079
Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660
| | ||||||||||| || |||| ||| ||||||| || |||| | | ||| ||
Sbjct 53080 AGTGCGGGAGGAATTGGAGTTAACGTCCATAATATTCGAGCACAAGGCACGATTATTGCT 53139
Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720
| | || ||| ||||| || | || ||||||||| | || || || | || ||
Sbjct 53140 GGAACTAATGGTATTTCAAACGGTTTAGTACCAATGTTACGGGTTTTTAATAATACAGCT 53199
Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCT 110777
|||||| ||||||| ||||| | || ||| | ||||| || ||| | |||||
Sbjct 53200 CGATATGTCGATCAAGGGGGTAATAAAAGACCTGGAGCGTTTGCAATTTATTTAGAACCG 53259
Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837
|||||| | ||| | |||| || ||| | | |||||| || |||||||
Sbjct 53260 TGGCATGCGGATGTTGTTGATTTTTTAAATTTAAAAAAAAATACTGGGGCTGAAGAAGTT 53319
Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897
|| || | |||||||||||||| | |||||| | |||||||| |||||||| || |
Sbjct 53320 AGGGCGAGAGATTTATTTTATGCTTTATGGATTCCTGATTTATTTATGAAACGCGTCGAG 53379
Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957
||| || |||||||| || ||||||||||||| | ||| ||| |||||||| |
Sbjct 53380 GAAGATTCAATGTGGTCGCTAATGTGTCCTCATCAATGTCCCGGTTTATCTGATTGTTGG 53439
Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATG-AAAAAGAAGGCAAGT--TTCGCAAA 111014
|| || | || | || | |||||||| || | |||||| | || | |||||
Sbjct 53440 GGGGAAAAATTCGTGGAATTATACGAAAATTACGAAAAAAGGAAAAAATTTGTTCGC--- 53496
Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGA 111071
||||| || || |||| | ||| ||| || ||| || ||| |||||||||||
Sbjct 53497 CAAATACCCGCCAGAGAATTATGG---AAAGCCATAATTGTGTCTCAAATTGAAACTGGA 53553
Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131
||||| ||||| ||||||||||| | |||||||||| ||| ||| |||||||
Sbjct 53554 ACTCCATATATGTTGTATAAAGACGCTTGTAATCGCAAAAGTAACCAACAACATTTAGGT 53613
Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155
||||| || ||| ||||| |||
Sbjct 53614 ACAATAAAAAGTAGCAATTTATGC 53637
>seq295
Length=373786
Score = 122 bits (134), Expect = 2e-22
Identities = 257/378 (68%), Gaps = 14/378 (4%)
Strand=Plus/Minus
Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGA 58921
||||||||||| | ||||||| |||||| | ||||||||| ||| | ||||
Sbjct 5754 ATATTAAAAGGAACTCCAAGACCCATATCCGCTGAACGTTGATATAATA----AACAAGA 5699
Query 58922 GTGTCATCTGCTTC---TACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATT 58978
|| ||| |||| ||||||||||||| |||| |||||||||||| | |||||||
Sbjct 5698 AAGT--TCTCCTTCGGCTACATAAAATTGAACTAAACAATGACAAGGAGGTAATGCCATT 5641
Query 58979 TTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTT 59038
||| |||||| | ||||| |||| | ||| || | ||| | || | ||||
Sbjct 5640 TTAGGGATATCAATGGGGTTCCAAGCACACATAATTATCCTTCGATCAGTTGGTTTATTT 5581
Query 59039 TTAATA-AGTTCTTCACAATGTTTTATTTGGTCAAATCC---ATTAGTATATTCAGTATT 59094
|||||| || | || || ||| ||| |||| || ||||||||| ||||| |
Sbjct 5580 TTAATAGTATTAATAAC-ATCCATTAATTGATCAATACCTTTATTAGTATAATCAGTGTG 5522
Query 59095 GGCATCAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAGT 59154
|| | |||| | |||| ||| | ||||||||||||||| | |||||| | |
Sbjct 5521 CATATTACCATATTCAGCTCCATAATGTCTCCATTGAAAACCATAAATAGGTCCCAAATC 5462
Query 59155 TCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATC 59214
||||| | ||| |||||||| ||||| | | |||| || || || ||
Sbjct 5461 GCCTTCTTCACGATCAGTTAAACCAATTGAGTCTAAATATTCCCTGGTGCTGTTGGGATT 5402
Query 59215 CCAAATATGAACATTATT 59232
|||||||| ||||| ||
Sbjct 5401 CCAAATATTCACATTTTT 5384
>seq531
Length=395284
Score = 113 bits (124), Expect = 1e-19
Identities = 147/199 (74%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| |||||| | ||| ||||| | ||| || | ||||| ||||| ||| |
Sbjct 187057 CAAAAATCTGGGAAACCATTAAAAGCGGTTAAAGCTCGATTAAAAGGCAAAGAAGGTAGG 186998
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
|||||||||||||| |||||||||||||||||||| ||| | | ||||||||||||
Sbjct 186997 ATTCGAGGTAATCTCATGGGAAAACGTGTTGATTTCTCAGCACGTACTGTAATCACACCA 186938
Query 305066 GATTCTCAAATT-AGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTA 305122
|| || ||| || || || || || | |||||||||| ||| |||||| ||| |||
Sbjct 186937 GA-TCCCAATTTGAGAATTGATCAAGTTGGAGTTCCAA--GAAGTATTGCTCAAAATCTA 186881
Query 305123 ACATTTCCAGAGAAAGTTA 305141
|| || || || | ||||
Sbjct 186880 ACGTTCCCGGAAATTGTTA 186862
Score = 84.2 bits (92), Expect = 5e-11
Identities = 111/153 (73%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|||||| | || ||| | || || || ||| |||||||| |||| ||| ||||| |
Sbjct 186570 TTCAATCGTCAGCCAACCCTTCACAAGATGAGTATGATGGGTCATCGAGTTAAAGTTCTT 186511
Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTTT 305452
| | | |||||||| | ||| ||||| |||||| || ||||| || ||||||
Sbjct 186510 CCATGGTCAACATTTCGCATGAATTTAAGT---TGTACGTCGCCGTATAACGCCGATTTT 186454
Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485
||||| || ||||||||| |||| || || |||
Sbjct 186453 GATGGCGACGAAATGAATTTGCACGTTCCGCAA 186421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186705186861997
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |