Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1284 266 8e-66 seq295 122 2e-22 seq531 113 1e-19 >seq1284 Length=72753 Score = 266 bits (294), Expect = 8e-66 Identities = 582/864 (67%), Gaps = 21/864 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| ||||| || |||||| | ||| | || |||| || | || | Sbjct 52783 TATTTTGGTTTTAAAACACTCGAACGTTCATATCTCCTAAAAATCAACGGAAAAATTGCT 52842 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||| ||||| | || || || |||| ||||| || | || ||| || Sbjct 52843 GAACGTCCCCAACATATGTTAATGCGCGTGGCCGTTGGGATTCACGGTGAAGACATTGAA 52902 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 | | ||||||| ||| || | | | ||| | || ||| || | ||| || Sbjct 52903 TCAGCTATTGAAACTTACAATTACATGTCTGAGAAGTATTTTACTCACGCGAGTCCGACT 52962 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||||| ||||| || | | |||| || | || || |||||| || ||| | Sbjct 52963 TTATTTGCCGCAGCGACACCTCGCCCACAAATGTCGTCATG-TTTCTT--AGTAATGATG 53019 Query 110544 ---GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || ||||| || |||| |||| | | | | | || |||| |||| || ||| Sbjct 53020 CCGGAGGATTCAATCCAAGGCATTTTTAAATGTATCTCACAATGTGCTATTATATCAAAA 53079 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | ||||||||||| || |||| ||| ||||||| || |||| | | ||| || Sbjct 53080 AGTGCGGGAGGAATTGGAGTTAACGTCCATAATATTCGAGCACAAGGCACGATTATTGCT 53139 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || ||| ||||| || | || ||||||||| | || || || | || || Sbjct 53140 GGAACTAATGGTATTTCAAACGGTTTAGTACCAATGTTACGGGTTTTTAATAATACAGCT 53199 Query 110721 AAATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCT 110777 |||||| ||||||| ||||| | || ||| | ||||| || ||| | ||||| Sbjct 53200 CGATATGTCGATCAAGGGGGTAATAAAAGACCTGGAGCGTTTGCAATTTATTTAGAACCG 53259 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||| | ||| | |||| || ||| | | |||||| || ||||||| Sbjct 53260 TGGCATGCGGATGTTGTTGATTTTTTAAATTTAAAAAAAAATACTGGGGCTGAAGAAGTT 53319 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 || || | |||||||||||||| | |||||| | |||||||| |||||||| || | Sbjct 53320 AGGGCGAGAGATTTATTTTATGCTTTATGGATTCCTGATTTATTTATGAAACGCGTCGAG 53379 Query 110898 GAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATAT 110957 ||| || |||||||| || ||||||||||||| | ||| ||| |||||||| | Sbjct 53380 GAAGATTCAATGTGGTCGCTAATGTGTCCTCATCAATGTCCCGGTTTATCTGATTGTTGG 53439 Query 110958 GGAAAAGAGTTTGAAGACCTTTACGAAAAATATG-AAAAAGAAGGCAAGT--TTCGCAAA 111014 || || | || | || | |||||||| || | |||||| | || | ||||| Sbjct 53440 GGGGAAAAATTCGTGGAATTATACGAAAATTACGAAAAAAGGAAAAAATTTGTTCGC--- 53496 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGA 111071 ||||| || || |||| | ||| ||| || ||| || ||| ||||||||||| Sbjct 53497 CAAATACCCGCCAGAGAATTATGG---AAAGCCATAATTGTGTCTCAAATTGAAACTGGA 53553 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 ||||| ||||| ||||||||||| | |||||||||| ||| ||| ||||||| Sbjct 53554 ACTCCATATATGTTGTATAAAGACGCTTGTAATCGCAAAAGTAACCAACAACATTTAGGT 53613 Query 111132 ACAATTAAGTCTAGTAATTTGTGC 111155 ||||| || ||| ||||| ||| Sbjct 53614 ACAATAAAAAGTAGCAATTTATGC 53637 >seq295 Length=373786 Score = 122 bits (134), Expect = 2e-22 Identities = 257/378 (68%), Gaps = 14/378 (4%) Strand=Plus/Minus Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGA 58921 ||||||||||| | ||||||| |||||| | ||||||||| ||| | |||| Sbjct 5754 ATATTAAAAGGAACTCCAAGACCCATATCCGCTGAACGTTGATATAATA----AACAAGA 5699 Query 58922 GTGTCATCTGCTTC---TACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATT 58978 || ||| |||| ||||||||||||| |||| |||||||||||| | ||||||| Sbjct 5698 AAGT--TCTCCTTCGGCTACATAAAATTGAACTAAACAATGACAAGGAGGTAATGCCATT 5641 Query 58979 TTATCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTT 59038 ||| |||||| | ||||| |||| | ||| || | ||| | || | |||| Sbjct 5640 TTAGGGATATCAATGGGGTTCCAAGCACACATAATTATCCTTCGATCAGTTGGTTTATTT 5581 Query 59039 TTAATA-AGTTCTTCACAATGTTTTATTTGGTCAAATCC---ATTAGTATATTCAGTATT 59094 |||||| || | || || ||| ||| |||| || ||||||||| ||||| | Sbjct 5580 TTAATAGTATTAATAAC-ATCCATTAATTGATCAATACCTTTATTAGTATAATCAGTGTG 5522 Query 59095 GGCATCAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAGT 59154 || | |||| | |||| ||| | ||||||||||||||| | |||||| | | Sbjct 5521 CATATTACCATATTCAGCTCCATAATGTCTCCATTGAAAACCATAAATAGGTCCCAAATC 5462 Query 59155 TCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATC 59214 ||||| | ||| |||||||| ||||| | | |||| || || || || Sbjct 5461 GCCTTCTTCACGATCAGTTAAACCAATTGAGTCTAAATATTCCCTGGTGCTGTTGGGATT 5402 Query 59215 CCAAATATGAACATTATT 59232 |||||||| ||||| || Sbjct 5401 CCAAATATTCACATTTTT 5384 >seq531 Length=395284 Score = 113 bits (124), Expect = 1e-19 Identities = 147/199 (74%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | ||| ||||| | ||| || | ||||| ||||| ||| | Sbjct 187057 CAAAAATCTGGGAAACCATTAAAAGCGGTTAAAGCTCGATTAAAAGGCAAAGAAGGTAGG 186998 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 |||||||||||||| |||||||||||||||||||| ||| | | |||||||||||| Sbjct 186997 ATTCGAGGTAATCTCATGGGAAAACGTGTTGATTTCTCAGCACGTACTGTAATCACACCA 186938 Query 305066 GATTCTCAAATT-AGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTA 305122 || || ||| || || || || || | |||||||||| ||| |||||| ||| ||| Sbjct 186937 GA-TCCCAATTTGAGAATTGATCAAGTTGGAGTTCCAA--GAAGTATTGCTCAAAATCTA 186881 Query 305123 ACATTTCCAGAGAAAGTTA 305141 || || || || | |||| Sbjct 186880 ACGTTCCCGGAAATTGTTA 186862 Score = 84.2 bits (92), Expect = 5e-11 Identities = 111/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||| | || ||| | || || || ||| |||||||| |||| ||| ||||| | Sbjct 186570 TTCAATCGTCAGCCAACCCTTCACAAGATGAGTATGATGGGTCATCGAGTTAAAGTTCTT 186511 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTATAATGCGGATTTT 305452 | | | |||||||| | ||| ||||| |||||| || ||||| || |||||| Sbjct 186510 CCATGGTCAACATTTCGCATGAATTTAAGT---TGTACGTCGCCGTATAACGCCGATTTT 186454 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||| || ||||||||| |||| || || ||| Sbjct 186453 GATGGCGACGAAATGAATTTGCACGTTCCGCAA 186421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186705186861997