Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1284 717 0.0 seq1159 378 1e-99 seq104 104 3e-17 >seq1284 Length=72753 Score = 717 bits (794), Expect = 0.0 Identities = 1298/1883 (69%), Gaps = 29/1883 (2%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | || || ||||||||| | ||||||||| || | || ||| ||||| || Sbjct 54614 TTATCGACGGTGAATTGAATGGGTTGAGCTGCGGGTTTCGTTCTTAAATAATACATTCCT 54555 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| || ||| | | ||| ||||| ||||| || ||||| ||| ||| | || Sbjct 54554 GTTTTAAGTCCTTGTCGCCAGCCGTAAAAATGAATTGATGTTAAAACGGAGTAAGTCGGT 54495 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 | ||||| | || ||| | ||||| ||||||||||||||||| |||| | | || || Sbjct 54494 TTGGCTACGTAAAGATTTAAAGATTGGCTTTGATCGATGAAAGCCCCTCGAGCCGCGGCT 54435 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 ||||| || | || | | ||||||||||| || ||| |||| | ||| | ||| Sbjct 54434 TGATTTATGATGCATTTATTTGAAATTTCCCAAACTGTTTTATAAATTTCTTTTAAATCG 54375 Query 68605 TCTGGAA---GGCTCGTATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 || || | || | |||||||| || || | || | || ||| ||| || || Sbjct 54374 TCAGGGATTTGGGGGATGTTTTGAATTGAGCCGCGATTTGCAATTATTTGATTTTTCATT 54315 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 ||||| ||| | || || |||||| |||| | | || ||||||| | ||| Sbjct 54314 AAATCATCCCAAAGCCCCCTTTCGGTTAAATCTCTTAATAAGTGGTGATTAACAACTTGG 54255 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 || |||||||| | ||||| || || |||||||| || || ||||| | |||||| Sbjct 54254 AAATCCCCAGAAAGTACTCTTCGCGTATAAATATTCGATGTGTAAGGTTCAAAAGATTCG 54195 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 |||||||| ||||||||||| ||||| || |||||||| || || | | |||| |||| Sbjct 54194 TTATTTCCTAGAATTTGAGCTGTTGAAGCTGTTGGCATTGGGGCTAAGAGTAAAGAATTT 54135 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901 || | || ||| | | ||||| ||||||| | |||||||||||| | ||||||||| Sbjct 54134 CTTATTCCGTGTTTATTAATTTTTTCTTTTAATTCTTTCCAATCCCATAAATCAGATGGA 54075 Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTT 68961 ||||||||| | ||||||||| | ||||| ||||| || || || | || ||| Sbjct 54074 GTAACATTCCACATATCGTATTGCAAGATTCCTTTACTAACAGGGGAACCTTGGTAAGTT 54015 Query 68962 TCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATT 69021 |||||| || || | ||| |||| ||||||||| || ||||| ||||||||||||| Sbjct 54014 TCATAAACCCCGTCTTTTTCGGCTAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGC 53955 Query 69022 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGT-AA 69080 ||||| || || | | || | | || ||||| | ||||| || || | | | | Sbjct 53954 GTTTCAAAGATTTGCACGTTTAATTTATGGGCTTCGGGGCTATC-AAAGGGGAGTCTCAT 53896 Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 | |||||| |||||||| ||||| |||| ||||| || || || | ||| | ||||| Sbjct 53895 CAAAATAAAAGCATCTGCTAATCCTTGAATACCAATTCCAATGGGGCGATGGCGTTTATT 53836 Query 69141 TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || ||||||||||||| | || |||||||||| ||| |||| |||||| | |||| Sbjct 53835 GGACGTTTCAGCTTCTGGGAGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTT 53776 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT---CCATC---TAT 69254 ||| ||||| ||| |||| ||| ||||||||| | | | || | | Sbjct 53775 TGTTACAACTTTTGTGACGATTTTTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTT 53716 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||| ||| || | || | ||||||| |||||||||||| | |||| || | || Sbjct 53715 AACGAACTGGTTAACCGCAATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGT 53656 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||| || || || || |||| ||| |||| ||| || || || | || ||| || || Sbjct 53655 GTATTCAATGATTTCGGTGCATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTT 53596 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| || ||||| ||||| || || | ||| | ||||| ||||||||||| ||||| Sbjct 53595 ACTTTTGCGATTACAAGCGTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGA 53536 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTC--T 69492 | || || | |||||| | | || || |||| | | || || || | Sbjct 53535 CACAATTATGGCTTTCCATAATTCTCTGGCGGGTATT--TGGCGAACAAATTTTTTCCTT 53478 Query 69493 TTTTCATA--TTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAG 69550 ||||| || || ||||| || |||||| || |||||| |||| || || | Sbjct 53477 TTTTCGTAATTTTCGTATAATTCC--ACGAATTTTTCCCCCCAACAATCAGATAAACCGG 53420 Query 69551 GACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATA 69610 |||||| || |||||||| | ||||||| ||| |||| || ||||||||||||| Sbjct 53419 GACATTGATGAGGACACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATA 53360 Query 69611 GATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||| |||||||| | ||| ||| | |||||| | ||| ||||||| || |||| Sbjct 53359 AATCAGGAATCCATAAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTAT 53300 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 ||||||| | || | ||| || | || ||| | |||||| ||||||| ||| || || | Sbjct 53299 TTTTTTTTAAATTTAAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAA 53240 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 |||| |||| |||||| || || ||||| | |||| || || |||||| | || | Sbjct 53239 ACGCTCCAGGTCTTTTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCC 53180 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 | ||| || | | ||| || || ||||||| ||||||| |||| | ||| || Sbjct 53179 GTAACATTGGTACTAAACCGTTTGAAATACCATTAGTTCCAGCAATAATCGTGCCTTGTG 53120 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | ||||||||| | | || |||||||| || |||| || || | |||||| Sbjct 53119 CTCGAATATTATGGACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATT 53060 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAG 69969 || | | | | || || | || ||| || ||| ||| ||| ||||| Sbjct 53059 GTGAGATACATTTAAAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAG-AAACAT 53001 Query 69970 CTAGACATTT---GATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 ||||||| | || || | | | | || |||||| || ||| |||||||| Sbjct 53000 GACGACATTTGTGGGCGAGGTGTCGCTGCGGC---AAATAAAGTCGGACTCGCGTGAGTA 52944 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATG 70085 || | || ||||| | |||||| ||||||||||||||||| || || ||| | || Sbjct 52943 AAATACTTCTCAGACATGTAATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCG-TG 52885 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||| || | || || ||||| |||||||| || || ||||| | |||| || || Sbjct 52884 AATCCCAACGGCCACGCGCATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGAT 52825 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||| | || ||||| ||| || |||||||| |||||||| || ||||| || || | Sbjct 52824 TTTTAGGAGATATGAACGTTCGAGTGTTTTAAAACCAAAATAATTATATGAGAAATCACG 52765 Query 70206 TTCGTAAATAATAACAGAATTTA 70228 |||||||| ||| |||||||| Sbjct 52764 ATCGTAAATGATACAAGAATTTA 52742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 70339 AATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCA 70398 ||| |||| || ||||| || || | ||| | || || ||||| || || || | ||| Sbjct 43457 AATTGTTTCTTCGTTTCTTTATGGAGATTAGTCATAGCAATTCTAGCAGCAAGTGTTGCA 43398 Query 70399 TAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCT 70458 || |||||||| | |||| | ||||| || |||| |||||||| || || || || Sbjct 43397 TAATCAGGATGGTCTGTAATTTTTGTAGCAGCGGTTTCAGCAGCTAAGGTGTCCAACTCA 43338 Query 70459 ATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | || ||||| || ||| || ||||||||||| ||||||| Sbjct 43337 ACTGTGGTAACGCCTGGATAAAGACCTTGAATAACCTTCATGG 43295 >seq1159 Length=103958 Score = 378 bits (418), Expect = 1e-99 Identities = 624/893 (70%), Gaps = 13/893 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||||||| || ||||| |||||| || |||||||| || || |||||| Sbjct 49831 TTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATCAGATATAAG 49890 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 | ||| |||||||| |||||||||| ||| ||| ||||| | | || | ||| | | Sbjct 49891 ATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAGTTCAGTTAA 49950 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || | ||| |||||||| || ||||| ||| | | |||||||| || || | Sbjct 49951 TAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCATCCCGATTAA 50010 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 |||| || ||||| || |||| ||| || | ||| || || || || || || || Sbjct 50011 ACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATCGCGAATAAT 50070 Query 39565 CGATGTTACTACCT-CATCACTCGGTGGATGCAATAA-ATGTTTAAACATTAAGCAGGCG 39622 |||| ||| | | | ||| || ||||| || | |||||| ||| || || Sbjct 50071 ACTCGTTA-TACGTTCCTTTGACGGCTTTTG-AATAAGATATGTAAACAATAAACAAGCA 50128 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || |||||| || ||||| | ||||||||| |||||||| || | || ||| Sbjct 50129 AATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTAAACCGGGC 50188 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 |||| ||| |||||||| | |||||| || || |||||| ||| |||||||| || || Sbjct 50189 ATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGAAAATACCC 50248 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCAC 39799 || || || ||||| ||||| | | || || || | | | | | || ||||| Sbjct 50249 TCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGTCGCGTTTTTACTACTAATCCAA 50308 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || ||||||||||||||||| || |||||||| | ||||| || || ||||| | | Sbjct 50309 TTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCGTTAAATAAA 50368 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | | ||||| | ||| || ||| || || ||||||| || |||||||| || Sbjct 50369 AATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTACATTTCAGAG 50428 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || |||||||| || || ||||| ||||||||||| | |||||| || | || || Sbjct 50429 TGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTTACCTGAACT 50488 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||| || ||| | ||| | |||||||| || || ||||||||| ||| |||||||| Sbjct 50489 TCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCAGCAAAAAAG 50548 Query 40040 GCCAATACATGTTTAATAAAAT---ATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG 40096 || || ||||| ||||||| || | |||| || ||| | | ||| | |||| Sbjct 50549 GCTAAAACATGGGAGATAAAATGACGTTCGTTATCG---GTTAATGTTTGCCAATGATTG 50605 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 | |||||| || | |||||||||||||| |||||||| || || || |||| |||||| Sbjct 50606 AGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTGTTTGTAT 50665 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | ||| |||||| |||| | || ||||||| || || | ||||||| Sbjct 50666 TTCGCCCAAATATCAGGATACTCAATGGGAAAAACGACGAAACGTCTTGGATT 50718 >seq104 Length=333490 Score = 104 bits (114), Expect = 3e-17 Identities = 266/395 (67%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 163156 TATGGAAAAGGAATAAAGGGTGGAATGATGGCTGTCTTTTTGATGGGTTGCTATGATGAC 163215 ||||| | || | ||| |||||||||||| | | ||| | |||||||| || ||| | Sbjct 112952 TATGGTACTGGTAAAAAAGGTGGAATGATGTCGATTTTTCTAATGGGTTGTTACGATC-C 113010 Query 163216 GAGTC-TGGTAAATGGAAGACAGTAACTAAATGTTCC----GGACACGATGATAATACGT 163270 | || || | | | || || || || |||| |||||||||||||| || | Sbjct 113011 AAATCGTGATTATTTTTGTACTGTTACCAAG-GTTCATACAGGACACGATGATAAAACAT 113069 Query 163271 TA--AGGGTTCTACAAGACCAATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGT 163328 || | || || ||| | || | | ||||| ||||| ||| ||| || ||| | Sbjct 113070 TAGAACGG--CTTCAAAATGAACTCGATATGATAAAAATAAGTGGAGATATCAATAAAAT 113127 Query 163329 ACCAGAGTGGTTG-GTAGTTAATAAAATCTAT-ATTCCAGATTTTGTAGCAGAGGATCCA 163386 ||| | ||||| || || | ||| | || || || ||||| |||||| | || || Sbjct 113128 ACCTAAATGGTTACGTTGT--ACGAAAACAATGATCCCCGATTTAGTAGCAAAAGACCCC 113185 Query 163387 AAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAATCTCATACA 163446 ||| | ||| | ||||||||| | || || || || ||| | | || ||| || Sbjct 113186 AAAAACCAACCTGTTTGGGAAATTACGGGCGCGGAATTCACTCAACACGAAGTTCACACC 113245 Query 163447 GCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATCAGAAATGATAAAACGTGG 163506 ||||||||||| || ||| | || || || |||| | ||| || | || || || ||| Sbjct 113246 GCAAATGGAATTTCAATTCGTTTCCCAAGGGTTACAAAGATTCGAGAAGAAAAGACTTGG 113305 Query 163507 AAAGAATCAACTCATCTAAACGATTTAGTAAACTT 163541 ||||| ||||| || |||| || |||| ||| || Sbjct 113306 AAAGAGGCAACTAATTTAAATGAATTAGAAAAATT 113340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686848034330280