Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1159 295 5e-75 seq295 228 6e-55 seq979 98.7 8e-16 seq342 98.7 8e-16 >seq1159 Length=103958 Score = 295 bits (326), Expect = 5e-75 Identities = 567/823 (69%), Gaps = 20/823 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||||| ||||| ||| | |||| ||| || ||| | |||||| | || | || Sbjct 50706 TTCGTCGTTTTTCCCATTGAGTATCCTGATATTTGGGCGAAATACAAACAGGCGGAAGCT 50647 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 ||||||||||| | |||||||| ||| | | ||||| | |||||| ||||| Sbjct 50646 TCATTTTGGACCACTGAAGAAGTAGATCTTTCGAAAGATCTCAATCATTGGCAAACATTA 50587 Query 43820 AAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | | || ||| |||||||| || ||||| || ||||||||||| || || Sbjct 50586 AC-CGATAACGAACGTCATTTTATCTCCCATGTTTTAGCCTTTTTTGCTGCTTCTGATGG 50528 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || || || |||||||| ||| || ||| ||||||||||| || | |||||||| Sbjct 50527 AATTGTAAACGAAAATTTAGTTGAACGTTTTAGTCAAGAAGTTCAGGTAACGGAAGCACG 50468 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 |||||||| || ||||||||||| || ||||||||||| || ||||||||||| | | Sbjct 50467 TTGTTTTTACGGTTTTCAAATTGCTATTGAAAATATTCACTCTGAAATGTACAGCATGTT 50408 Query 43999 GATAGATACGTACATCAAAGAT-GGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 || || || || || ||| || | ||| || || ||||| || || |||| Sbjct 50407 AATTGAAACTTATATTTCTGATCCAAAACAAAAAGAAT-TTTTATTTAACGCCATCGAAA 50349 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114 | | ||| ||||| | ||||| || ||||| | || ||||| | | ||| | Sbjct 50348 CGCTTCCTTGTGTTAAAAAGAAAGCTGATTGGGCTTTAAATTGGATTAGTAGTAAAAACG 50289 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 ||||||| ||||| | || || ||||| | || || || ||||||||||| ||| Sbjct 50288 CGACTTTTGGGGAACGTTTAGTTGCTTTTGCGGCCGTTGAGGGTATTTTCTTTTCGGGAA 50229 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 ||||| || || |||||||| || || || ||||| ||||| || || |||||||| | Sbjct 50228 GTTTTGCAGCTATTTTTTGGTTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTA 50169 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 |||| ||||| || |||||||| ||||||| ||| |||||||| || || || || Sbjct 50168 ATGAATTAATTTCGCGCGATGAAGGTTTACATTACGAATTTGCTTGTTTATTGTTTACAT 50109 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAG--AC-AATTACAGATATTGTTGTAGAGGCAG 44351 |||| | | | ||||| ||| ||| || || || |||| || || || | Sbjct 50108 ATCT--TATTC-AAAAGCCGTCA---AAGGAACGTATAACGAGTATTATTCGCGATGCGG 50055 Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG 44411 | | || ||||| |||||| | || || | || || | |||||| || |||||| Sbjct 50054 TTGAAATTGAACAGGAATTTTTAACTGATGCTCTTCCGGTTAGTTTAATCGGGATGAATT 49995 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471 ||| ||| || || ||||| | |||| ||||||||| | ||||| |||| Sbjct 49994 GCAATTTAATGTCGCAGTACATTGAGTTTGTTGCCGATCGTTTATTAACTGAACTTGGTT 49935 Query 44472 GCGATAAACACTATATTGTACAA--AACCCGTTTGATTTTATG 44512 | | ||| | |||| | ||| || || |||||||||||| Sbjct 49934 GTG--AAAAATTATACAATTCAACTAATCCATTTGATTTTATG 49894 >seq295 Length=373786 Score = 228 bits (252), Expect = 6e-55 Identities = 360/513 (70%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || |||| |||||| | |||||| || | | |||||||| |||||| Sbjct 5285 TTTCCTTTATTAACAACAAAACGCGTTTTTTGGCGCGGTGTAGTTGAAGAACTTTTATGG 5344 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 || || | ||| |||| || ||||| | ||| || | | | ||| | ||||||||| Sbjct 5345 TTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATGTGAATATTTGGAAT 5404 Query 40812 GCGCACAGTTCTAAAACATATTT-GTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870 | |||| | | |||||| | || || || ||| ||| | || ||||| || Sbjct 5405 CCCAACAGCACCAGGGAATATTTAGACTCA-ATTGGTTTAACTGATCGTGAAGAAGGCGA 5463 Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930 | | || ||| ||||||| ||||| | | |||||| |||||| |||||| | |||| | Sbjct 5464 TTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGAATATGGTAATATGCA 5523 Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATC 40990 | |||||||||| |||||||| || ||||||||| | ||||| |||| |||||| Sbjct 5524 CACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTATTAATACTATTAAAAA 5583 Query 40991 CGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGAT 41050 | || | ||| | ||||| |||| || |||||||| | || | | | || Sbjct 5584 TAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGAACCCCATTGATATCCCTAAAAT 5643 Query 41051 GGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110 |||||| || |||||||||| ||| ||| ||||| || | | || ||||| || || Sbjct 5644 GGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATGTAGCCGAAGGAGAACTTTCTTG 5703 Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | ||| |||||| | |||| || ||||| || || || || ||||| || || ||||| Sbjct 5704 TTTATTATATCAACGTTCAGCGGATATGGGTCTTGGAGTTCCTTTTAATATCGCCAGTTA 5763 Query 41171 TGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||| | || || ||||||||||| || ||||| Sbjct 5764 TGCTTTACTTACTTATATGATTGCTCATGTTAC 5796 >seq979 Length=53625 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 |||||||||||||| || |||| | ||||| || || || ||| |||||||| Sbjct 28153 GGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATTG 28212 Query 19390 ATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || || || || | ||| ||| | | | | || || ||||| || |||||| Sbjct 28213 ATGGCACGACAAATTGGAAAAATGTTAAATGCTAGAGAA---CCAAAAATCGTTAATGGT 28269 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 || | || ||| |||||||||| ||| |||| |||| ||||| || | || |||||| Sbjct 28270 CCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGCT 28329 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || |||||||| ||| | ||| Sbjct 28330 GAAGCTGAAGAGGAAGAGAAA 28350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||| ||| ||| || || || || | |||||| | || || || ||||| ||||| Sbjct 28416 CAACAGTGGTTTACATATAATCATTTTCGATGAAATTGATGCTATTTGTAAAGCCAGAGG 28475 Query 19599 TTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 || || || |||| ||||| || |||||||| || |||||| | | |||||| | Sbjct 28476 ATCAGTTGCTGGAAATACAGGAGTTCACGACACTGTAGTTAATCAATTATTATCAAAAAT 28535 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGG 19691 || || ||| | ||| | |||||||||||||||||||| Sbjct 28536 TGATGGCGTTGAACAATTAAATAATATTTTAGTTATTGG 28574 >seq342 Length=147665 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 |||||||||||||| || |||| | ||||| || || || ||| |||||||| Sbjct 42717 GGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATTG 42658 Query 19390 ATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || || || || | ||| ||| | | | | || || ||||| || |||||| Sbjct 42657 ATGGCACGACAAATTGGAAAAATGTTAAATGCTAGAGAA---CCAAAAATCGTTAATGGT 42601 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 || | || ||| |||||||||| ||| |||| |||| ||||| || | || |||||| Sbjct 42600 CCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGCT 42541 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || |||||||| ||| | ||| Sbjct 42540 GAAGCTGAAGAGGAAGAGAAA 42520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 ||| ||| ||| || || || || | |||||| | || || || ||||| ||||| Sbjct 42454 CAACAGTGGTTTACATATAATCATTTTCGATGAAATTGATGCTATTTGTAAAGCCAGAGG 42395 Query 19599 TTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652 || || || |||| ||||| || |||||||| || |||||| | | |||||| | Sbjct 42394 ATCAGTTGCTGGAAATACAGGAGTTCACGACACTGTAGTTAATCAATTATTATCAAAAAT 42335 Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGG 19691 || || ||| | ||| | |||||||||||||||||||| Sbjct 42334 TGATGGCGTTGAACAATTAAATAATATTTTAGTTATTGG 42296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421719047385