Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01]
7,077 sequences; 270,533,845 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1159 295 5e-75
seq295 228 6e-55
seq979 98.7 8e-16
seq342 98.7 8e-16
>seq1159
Length=103958
Score = 295 bits (326), Expect = 5e-75
Identities = 567/823 (69%), Gaps = 20/823 (2%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|| ||||| ||||| ||| | |||| ||| || ||| | |||||| | || | ||
Sbjct 50706 TTCGTCGTTTTTCCCATTGAGTATCCTGATATTTGGGCGAAATACAAACAGGCGGAAGCT 50647
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819
||||||||||| | |||||||| ||| | | ||||| | |||||| |||||
Sbjct 50646 TCATTTTGGACCACTGAAGAAGTAGATCTTTCGAAAGATCTCAATCATTGGCAAACATTA 50587
Query 43820 AAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878
| | | || ||| |||||||| || ||||| || ||||||||||| || ||
Sbjct 50586 AC-CGATAACGAACGTCATTTTATCTCCCATGTTTTAGCCTTTTTTGCTGCTTCTGATGG 50528
Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938
|| || || |||||||| ||| || ||| ||||||||||| || | ||||||||
Sbjct 50527 AATTGTAAACGAAAATTTAGTTGAACGTTTTAGTCAAGAAGTTCAGGTAACGGAAGCACG 50468
Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998
|||||||| || ||||||||||| || ||||||||||| || ||||||||||| | |
Sbjct 50467 TTGTTTTTACGGTTTTCAAATTGCTATTGAAAATATTCACTCTGAAATGTACAGCATGTT 50408
Query 43999 GATAGATACGTACATCAAAGAT-GGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057
|| || || || || ||| || | ||| || || ||||| || || ||||
Sbjct 50407 AATTGAAACTTATATTTCTGATCCAAAACAAAAAGAAT-TTTTATTTAACGCCATCGAAA 50349
Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114
| | ||| ||||| | ||||| || ||||| | || ||||| | | ||| |
Sbjct 50348 CGCTTCCTTGTGTTAAAAAGAAAGCTGATTGGGCTTTAAATTGGATTAGTAGTAAAAACG 50289
Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174
||||||| ||||| | || || ||||| | || || || ||||||||||| |||
Sbjct 50288 CGACTTTTGGGGAACGTTTAGTTGCTTTTGCGGCCGTTGAGGGTATTTTCTTTTCGGGAA 50229
Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234
||||| || || |||||||| || || || ||||| ||||| || || |||||||| |
Sbjct 50228 GTTTTGCAGCTATTTTTTGGTTGAAAAAGCGGGGTTTAATGCCCGGTTTAACGTTTTCTA 50169
Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294
|||| ||||| || |||||||| ||||||| ||| |||||||| || || || ||
Sbjct 50168 ATGAATTAATTTCGCGCGATGAAGGTTTACATTACGAATTTGCTTGTTTATTGTTTACAT 50109
Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAG--AC-AATTACAGATATTGTTGTAGAGGCAG 44351
|||| | | | ||||| ||| ||| || || || |||| || || || |
Sbjct 50108 ATCT--TATTC-AAAAGCCGTCA---AAGGAACGTATAACGAGTATTATTCGCGATGCGG 50055
Query 44352 TAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG 44411
| | || ||||| |||||| | || || | || || | |||||| || ||||||
Sbjct 50054 TTGAAATTGAACAGGAATTTTTAACTGATGCTCTTCCGGTTAGTTTAATCGGGATGAATT 49995
Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471
||| ||| || || ||||| | |||| ||||||||| | ||||| ||||
Sbjct 49994 GCAATTTAATGTCGCAGTACATTGAGTTTGTTGCCGATCGTTTATTAACTGAACTTGGTT 49935
Query 44472 GCGATAAACACTATATTGTACAA--AACCCGTTTGATTTTATG 44512
| | ||| | |||| | ||| || || ||||||||||||
Sbjct 49934 GTG--AAAAATTATACAATTCAACTAATCCATTTGATTTTATG 49894
>seq295
Length=373786
Score = 228 bits (252), Expect = 6e-55
Identities = 360/513 (70%), Gaps = 2/513 (0%)
Strand=Plus/Plus
Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751
||||| || |||| |||||| | |||||| || | | |||||||| ||||||
Sbjct 5285 TTTCCTTTATTAACAACAAAACGCGTTTTTTGGCGCGGTGTAGTTGAAGAACTTTTATGG 5344
Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811
|| || | ||| |||| || ||||| | ||| || | | | ||| | |||||||||
Sbjct 5345 TTCATTAGAGGGAGTACCAACGCTAAAGATTTAGCAAAGAAAAATGTGAATATTTGGAAT 5404
Query 40812 GCGCACAGTTCTAAAACATATTT-GTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870
| |||| | | |||||| | || || || ||| ||| | || ||||| ||
Sbjct 5405 CCCAACAGCACCAGGGAATATTTAGACTCA-ATTGGTTTAACTGATCGTGAAGAAGGCGA 5463
Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930
| | || ||| ||||||| ||||| | | |||||| |||||| |||||| | |||| |
Sbjct 5464 TTTGGGACCTATTTATGGTTTTCAATGGAGACATTATGGAGCTGAATATGGTAATATGCA 5523
Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATC 40990
| |||||||||| |||||||| || ||||||||| | ||||| |||| ||||||
Sbjct 5524 CACTGATTATACTAATAAAGGTATTGATCAATTAATGGATGTTATTAATACTATTAAAAA 5583
Query 40991 CGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGAT 41050
| || | ||| | ||||| |||| || |||||||| | || | | | ||
Sbjct 5584 TAAACCAACTGATCGAAGGATAATTATGTGTGCTTGGAACCCCATTGATATCCCTAAAAT 5643
Query 41051 GGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110
|||||| || |||||||||| ||| ||| ||||| || | | || ||||| || ||
Sbjct 5644 GGCATTACCTCCTTGTCATTGTTTAGTTCAATTTTATGTAGCCGAAGGAGAACTTTCTTG 5703
Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170
| ||| |||||| | |||| || ||||| || || || || ||||| || || |||||
Sbjct 5704 TTTATTATATCAACGTTCAGCGGATATGGGTCTTGGAGTTCCTTTTAATATCGCCAGTTA 5763
Query 41171 TGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
|||| | || || ||||||||||| || |||||
Sbjct 5764 TGCTTTACTTACTTATATGATTGCTCATGTTAC 5796
>seq979
Length=53625
Score = 98.7 bits (108), Expect = 8e-16
Identities = 143/201 (71%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389
|||||||||||||| || |||| | ||||| || || || ||| ||||||||
Sbjct 28153 GGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATTG 28212
Query 19390 ATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446
|| || || || || | ||| ||| | | | | || || ||||| || ||||||
Sbjct 28213 ATGGCACGACAAATTGGAAAAATGTTAAATGCTAGAGAA---CCAAAAATCGTTAATGGT 28269
Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506
|| | || ||| |||||||||| ||| |||| |||| ||||| || | || ||||||
Sbjct 28270 CCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGCT 28329
Query 19507 GACGCTGAAGAAGAACAAAAA 19527
|| |||||||| ||| | |||
Sbjct 28330 GAAGCTGAAGAGGAAGAGAAA 28350
Score = 86.0 bits (94), Expect = 5e-12
Identities = 115/159 (72%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598
||| ||| ||| || || || || | |||||| | || || || ||||| |||||
Sbjct 28416 CAACAGTGGTTTACATATAATCATTTTCGATGAAATTGATGCTATTTGTAAAGCCAGAGG 28475
Query 19599 TTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652
|| || || |||| ||||| || |||||||| || |||||| | | |||||| |
Sbjct 28476 ATCAGTTGCTGGAAATACAGGAGTTCACGACACTGTAGTTAATCAATTATTATCAAAAAT 28535
Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGG 19691
|| || ||| | ||| | ||||||||||||||||||||
Sbjct 28536 TGATGGCGTTGAACAATTAAATAATATTTTAGTTATTGG 28574
>seq342
Length=147665
Score = 98.7 bits (108), Expect = 8e-16
Identities = 143/201 (71%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389
|||||||||||||| || |||| | ||||| || || || ||| ||||||||
Sbjct 42717 GGATGTAAACATGTAAAAGGTATTTTATTATATGGTCCTCCTGGGACTGGTAAAACATTG 42658
Query 19390 ATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAACCTCCCAAAATTGTAAATGGT 19446
|| || || || || | ||| ||| | | | | || || ||||| || ||||||
Sbjct 42657 ATGGCACGACAAATTGGAAAAATGTTAAATGCTAGAGAA---CCAAAAATCGTTAATGGT 42601
Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506
|| | || ||| |||||||||| ||| |||| |||| ||||| || | || ||||||
Sbjct 42600 CCACAGATTTTAGATAAATATGTTGGTGAATCTGAAGCGAATGTTCGTAGGTTATTTGCT 42541
Query 19507 GACGCTGAAGAAGAACAAAAA 19527
|| |||||||| ||| | |||
Sbjct 42540 GAAGCTGAAGAGGAAGAGAAA 42520
Score = 86.0 bits (94), Expect = 5e-12
Identities = 115/159 (72%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598
||| ||| ||| || || || || | |||||| | || || || ||||| |||||
Sbjct 42454 CAACAGTGGTTTACATATAATCATTTTCGATGAAATTGATGCTATTTGTAAAGCCAGAGG 42395
Query 19599 TTC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATT 19652
|| || || |||| ||||| || |||||||| || |||||| | | |||||| |
Sbjct 42394 ATCAGTTGCTGGAAATACAGGAGTTCACGACACTGTAGTTAATCAATTATTATCAAAAAT 42335
Query 19653 AGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGG 19691
|| || ||| | ||| | ||||||||||||||||||||
Sbjct 42334 TGATGGCGTTGAACAATTAAATAATATTTTAGTTATTGG 42296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397421719047385
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