Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1284 273 2e-68 seq241 120 3e-22 seq412 118 9e-22 >seq1284 Length=72753 Score = 273 bits (302), Expect = 2e-68 Identities = 990/1532 (65%), Gaps = 44/1532 (3%) Strand=Plus/Minus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||| ||| || || | ||||| | ||| ||||| |||| || || | || || Sbjct 54285 ATCTCTTAATAAGTGGTGATTAACAACTTGGAAATCCCCAGAAAGTACTCTTCGCGTATA 54226 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 ||| || ||| | |||||||| |||||||| || || | ||||| ||||| | || Sbjct 54225 AATATTCGATGTGTAAGGTTCAAAAGATTCGTTATTTCCTAGAATTTGAGCTGTTGAAGC 54166 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| || | | || |||||| | | ||||| | | |||||| || Sbjct 54165 TGTTGGCATTGGGGCTAAGAGTAAAGAATTTCTTATTCCGTGTTTATTAATTTTTTCTTT 54106 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAG 130974 ||||| | ||||||||||| | | || | ||||| ||||||||| |||| | Sbjct 54105 TAATTCTTTCCAATCCCATAAATCAGATGGAGTAACATT---CCACATATCGTATTGCAA 54049 Query 130975 TATGCCTTTACTGGCGGGACTGGA---TTCGAACGATTCGTAGATTCCTTCGACACGAGC 131031 || |||||||| | || ||| || | | | ||| || | || || || Sbjct 54048 GATTCCTTTACTAACAGG---GGAACCTTGGTAAGTTTCATAAACCCCGTCTTTTTCGGC 53992 Query 131032 CAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAA 131091 | || |||||||| || || |||||||||| ||||| ||||| ||||| Sbjct 53991 TAATTCACAACTAGCTTCTAAGGCACCGTAATAAAGCGTTTCAAAGATTTGCACGTTTAA 53932 Query 131092 TTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151 || | |||| | ||| || | || | | |||| ||||||||||| ||||| | || Sbjct 53931 TTTATGGGCTTCGGGGCTATCAAAGGGGAGTCTCATCAAAATAAAAGCATCTGCTAATCC 53872 Query 131152 CTGTATCCCAACGCCCACCGGTCTATGTTTTAAATT--ACATTTACGCGAACATTCGGTG 131209 || || |||| || | || | ||| | ||| || ||| || ||| | | Sbjct 53871 TTGAATACCAATTCCAATGGGGCGATGGCGTTTATTGGACGTTTCAGC-----TTCTGGG 53817 Query 131210 ---GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACG 131266 || ||| |||| || || | ||| |||||||| ||||| || ||||||| Sbjct 53816 AGTGGGTAATAATTAACATCGATAACTTTATTTAAATTTTTTGTTACAACTTTTGTGACG 53757 Query 131267 CTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACAT 131326 |||| ||||| || |||||||| | | ||| | || || || || || || Sbjct 53756 ATTTTTAATTTTTCAAAATCAAAACTTTTCCTGTCGGGTTTAACGAACTGGTTAACCGCA 53697 Query 131327 ATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCG 131386 ||||| || | |||||||||||| |||| ||| | || | || ||||||| | Sbjct 53696 ATTGATGCTAAATTACAAACTGCGATTTCATCAGGAGATGTGTATTCAATGATTTCGGTG 53637 Query 131387 CACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG- 131445 || ||||| || || ||||| || || |||| |||||| || ||||| ||| ||| | Sbjct 53636 CATAAATTGCTACTTTTTATTGTACCTAAATGTTGTTGGTTACTTTTGCGATT-ACAAGC 53578 Query 131446 GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAA 131505 ||| || |||| ||| || || || || ||||| | ||||| |||| ||| | | Sbjct 53577 GTCTTTATACAACATATATGGAGTTCCAGTTTCAATTTGAGACACAATTATGGCTTTCCA 53518 Query 131506 GAGTTTTCGAGCAGACAATTG----ATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 | || || || | | ||| | | | | || | ||||||||||||||||| Sbjct 53517 TAATTCTCTGGCGGGTATTTGGCGAACAAATTTTTTC----CTTTTTTCGTAATTTTCGT 53462 Query 131562 ACAACGTTTCA--AAGTTTTGGCCA-AACGAACTGTCCAAATTGGGACATTCGCTG-GGA 131617 | || || || || |||| || ||| | | | ||| |||||||| | || ||| Sbjct 53461 ATAA--TTCCACGAATTTTTCCCCCCAACAATCAGAT-AAACCGGGACATT-GATGAGGA 53406 Query 131618 CACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCAT 131677 |||||||||||||||| | | || || || |||||||| ||||| || | |||| Sbjct 53405 CACATTAGCGACCACATTGAATCTTCCTCGACGCGTTTCATAAATAAATCAGGAATCCAT 53346 Query 131678 AACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTT 131737 || || || || | |||||| || | ||||| | || || ||||||| |||||| Sbjct 53345 AAAGCATAAAATAAATCTCTCGCCCTAACTTCTTCAGCCCCAGTATTTTTTTTTAAATTT 53286 Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTG 131794 ||||| || | || ||||||||||| ||||| ||||| | ||| | || || | | Sbjct 53285 AAAAAATCAACAACATCCGCATGCCACGGTTCTAAATAAATTGCAAACGCTCCAGGTCTT 53226 Query 131795 CGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCC 131854 ||||| ||||||| |||| ||| | | || || | || || ||||| || | Sbjct 53225 TTATTACCCCCTTGATCGACATATCGAGCTGTATTATTAAAAACCCGTAACATTGGTACT 53166 Query 131855 AAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGA 131914 |||||||| | | ||||| || | ||| |||| | |||| || || || Sbjct 53165 AAACCGTTTGAAATACCATTAGTTCCAGCAATAATCGTGCCTTGTGCTCGAATATTATGG 53106 Query 131915 ACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTA 131974 ||||| | |||||| ||||| | ||| || || | || |||| | | | ||| Sbjct 53105 ACGTTAACTCCAATTCCTCCCGCACTTTTTGATATAATAGCACATTGTGAGATACATTTA 53046 Query 131975 TAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGG 132034 | || |||| | ||| | | || ||||| || || || |||| ||| || Sbjct 53045 AAAATGCCTTGGATTGAATCCTCCGGCATCATTACTAAGAAACATGACGACATTTGTGGG 52986 Query 132035 TGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATG 132094 || ||| | || | ||| || || || || ||||| |||||| || | | |||| Sbjct 52985 CGAGGTGTCGCTGCGGCAAATAAAGTCGGACTCGCGTGAGTAAAATACTTCTCAGACATG 52926 Query 132095 CACCGATACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGC 132154 | || | || ||||| || || || || | || || | || || ||| Sbjct 52925 TAATTGTAAGTTTCAATAGCTGATTCAATGTCTTCACCGTGAATCCCAACGGCCACGCGC 52866 Query 132155 ATGTACATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATA--ACCGT 132212 || |||| ||||| || || || |||| |||| |||||| | | ||| | || Sbjct 52865 ATTAACATATGTTGGGGACGTTCAGCAATTTTTCCGTTGATTTTTAGGAGATATGAACG- 52807 Query 132213 TTTCCAAAGTTTTGAAACCAAAATATTTGTAT 132244 ||| | ||||| ||||||||||| || ||| Sbjct 52806 -TTCGAGTGTTTTAAAACCAAAATAATTATAT 52776 >seq241 Length=949647 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||||||||| || | ||||| || ||||| |||||||| || Sbjct 167188 CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAA 167129 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | ||||| || |||||||||||| | || | ||| |||||||| || || Sbjct 167128 AGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 167069 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | || || ||||| ||| || ||| | |||| | || || | |||| ||||| Sbjct 167068 ATTCCTTCCTTATCCTGGATTTTAGCTTTAACATTTTCAATGGTATCAGATGGC-TCAAC 167010 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||| |||| ||| || |||| |||||| ||||| || ||||| Sbjct 167009 TTCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 |||| |||||| ||||| | || || |||||||| || ||||| || | | || Sbjct 167407 AACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAAAGAGTACGA 167348 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| || |||||||||||| | || | ||| |||||||| || || | || || Sbjct 167347 CCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCTTCC 167288 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGT 27208 || || ||| || ||| | | || | || || | |||| |||||||| | || Sbjct 167287 TTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTATCAGATGGC-TCAACTTCCAATGT 167229 Query 27209 TATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||| || |||| |||||| |||||||| ||||| Sbjct 167228 AATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 |||| |||||| ||||| | || || ||||||||||| ||||| || | | || Sbjct 167635 AACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGA 167576 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||||||| | || | ||| |||||||| || || | || || Sbjct 167575 CCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGGATTCCTTCC 167516 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || ||| || ||| | |||| | || || | | ||| |||||||| || Sbjct 167515 TTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCACTTCTAGGGTG 167456 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || || | ||||| || ||||||||||| Sbjct 167455 ATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | |||||||||||| | || || || ||||| |||||||| || Sbjct 166048 CCACCTCTCAATCTCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGAA 165989 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||||| || || | || | ||| |||||||| || || Sbjct 165988 AGAGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 165929 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | || || ||||| ||||| ||| | |||||| ||||| | |||| ||||| Sbjct 165928 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCTATGGTGTCGGATGGC-TCAAC 165870 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | || |||| || || |||| |||||| || ||||| ||||| Sbjct 165869 TTCCAATGTAATAGTCTTTCCAGTCAAAGTTTTGACGAAGATCTGCAT 165822 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| | ||| || ||||| | || || |||||||| || || || || Sbjct 166732 CCACCTCGCAATCTCAACACTAAATGGAGGGTGGATTCTTTTTGGATGTTATAATCCGAA 166673 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| || |||||||||||| | || | ||| ||||| || || || Sbjct 166672 AGAGTACGTCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGGTCTGGTGGG 166613 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||| || ||| | | |||| | ||| || | | ||| ||| Sbjct 166612 ATCCCTTCTTTATCCTGGATTTTAGCTTTAACGTTTTCAATAGTATCAGAAGGTTCGACT 166553 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || || | || || ||||| |||||||| Sbjct 166552 TCCAATGTGATGGTTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || ||||| |||||||| || | | | || | ||||| Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||| ||| |||| | |||||||||||| || || | || || || || | Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | |||| | ||| || | | ||| ||||||| || || | ||| Sbjct 167734 ATTTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTTT 167675 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || | ||||| || ||||||||||| Sbjct 167674 CCAGTTAATGTTTTTACGAAGATTTGCAT 167646 >seq412 Length=275653 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| | | || ||||| ||||| || ||||| |||||||| || || Sbjct 83015 CCACCACGCAATCTTAGGACTAAATGCAACGTTGATTCTTTCTGAATATTATAATCAGAA 82956 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | |||||||| ||||| || ||| |||| | ||||||||||||||| || Sbjct 82955 AGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAAAATTAAACGCTGTTGATCCGGTGGG 82896 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| || | |||| | || || | | || || Sbjct 82895 ATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCGGAAGGCTCGACC 82836 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| | ||||| || | |||||| |||||||| |||||| Sbjct 82835 TCAAGAGTTATGGTCTTGCCAGTTAAAGTTTTAACAAAGATCTGCATA 82788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424897749009624