Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq241 143 2e-29 seq569 140 2e-28 seq412 111 1e-19 seq62 91.5 9e-14 >seq241 Length=949647 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 166960 CCACCTCTCAATCTCAATACTAAATGGAGAGTTGATTCTTTTTGGATGTTGTAGTCAGAA 166901 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||||||||||||||| ||||| |||||||| ||||| || || || Sbjct 166900 AGAGTACGCCCATCTTCAAGTTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGAGGA 166841 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || || |||| || | |||||| | |||||| || || || Sbjct 166840 ATTCCTTCTTTATCCTGGATC-TTAGCTTTAACATTTTCAATTGTATCAGAAGGTTCAAC 166782 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || |||||||||||||| || || |||||||| ||||| Sbjct 166781 TTCCAAGGTGATGGTTTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 166734 Score = 140 bits (154), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||| |||||||| ||| || ||||| ||||||||||| ||||| || || | || Sbjct 166718 CAACACTAAATGGAGGGTGGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGTCCATC 166659 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 |||||||||||||||||| || |||||||| |||||||| || || | || || || || Sbjct 166658 TTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGGTCTGGTGGGATCCCTTCTTTATC 166599 Query 34614 TGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | ||||||| | ||| || || || ||||||| || || | Sbjct 166598 CTGGAT-TTTAGCTTTAACGTTTTCAATAGTATCAGAAGGTTCGACTTCCAATGTGATGG 166540 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||||| || || |||||||| ||||| Sbjct 166539 TTTTACCAGTTAAGGTCTTAACAAAAATTTGCAT 166506 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| |||||||| |||||||| || || ||||| ||| Sbjct 167188 CCACCTCTCAATCTCAATACCAAGTGGAGAGTAGATTCCTTTTGGATATTGTAATCAGAA 167129 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | |||||||||||||||||||| || |||||||| ||||| || || || Sbjct 167128 AGAGTGCGCCCATCTTCAAGTTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 167069 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || ||| ||| | |||||| | ||| || || ||| || Sbjct 167068 ATTCCTTCCTTATCCTGGAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 167010 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || ||||| |||||||||||||| Sbjct 167009 TTCTAAAGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 166962 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || |||||||| || || ||||| ||||| ||||| ||| Sbjct 167416 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 167357 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||||||||| || || ||||| ||||| || || || Sbjct 167356 AGAGTACGACCATCTTCAAGTTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 167297 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||| | |||||| | ||| || || ||| || Sbjct 167296 ATTCCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTCTCAATGGTATCAGATGGCTCAAC 167238 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 167237 TTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 167190 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || |||||||| || || ||||||||||| ||||| ||| Sbjct 167644 CCACCTCTTAACCTCAATACTAAATGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAA 167585 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | |||||||||||| || |||||||| ||||| || || || Sbjct 167584 AGAGTACGACCATCTTCTAATTGTTTACCGGCGAAGATTAAACGTTGTTGATCTGGTGGG 167525 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||| | |||||| | ||| || || ||||| Sbjct 167524 ATTCCTTCCTTGTCTTGGAT-TTTAGCTTTAACATTTTCAATGGTATCAGAAGGTTCCAC 167466 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 167465 TTCTAGGGTGATGGTTTTTCCAGTTAATGTTTTTACGAAGATTTGCAT 167418 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||||||||||||||| || || ||||| ||||| ||||| ||| Sbjct 166276 CCTCCTCTCAATCTCAACACCAAATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGAA 166217 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||||||| ||||| ||||| || ||||| || || || Sbjct 166216 AGAGTGCGTCCGTCTTCTAATTGTTTACCAGCAAAGATTAATCGTTGTTGATCTGGAGGA 166157 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || || ||| ||| | |||||| | ||| || || ||| || Sbjct 166156 ATTCCTTCTTTATCCTGGAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 166098 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 166097 TTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTGACAAAGATCTGCAT 166050 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| |||||| |||||||| || || ||||||||||| || || | ||||| Sbjct 167854 ACTAAATGCAGAGTGGATTCCTTTTGGATATTGTAATCTGAAAGGGTACGTCCATCTTCC 167795 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||||||| || || || ||||||||||| || || || | ||| ||||||||| | Sbjct 167794 AATTGTTTACCAGCGAAAATCAAACGCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 167735 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| | |||||| | ||| || || |||||||| | ||| || ||||| Sbjct 167734 AT-TTTAGCTTTAACATTTTCAATAGTATCAGAAGGTTCCACTTCTAAGGTGATGGTTTT 167676 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| || || || ||||| Sbjct 167675 TCCAGTTAATGTTTTTACGAAGATTTGCAT 167646 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| ||||| |||||||| |||||||| || || ||||| ||||| || || | || Sbjct 165806 CAATACCAAGTGGAGAGTTGATTCCTTTTGGATATTGTAATCGGAAAGGGTACGTCCATC 165747 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| | |||||| |||||||| || || || |||||||| || || | ||||| ||||| Sbjct 165746 TTCTAATTGTTTTCCGGCAAAGATCAACCGTTGTTGGTCTGGTGGGATCCCCTCTTTGTC 165687 Query 34614 TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 ||| ||| | || || | ||| ||||| ||| || || | || || | Sbjct 165686 CTGGAT-TTTCGCCTTCACATTTTCAATAGTGTCAGATGGCTCGACCTCTAACGTGATGG 165628 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || |||||||| ||||||||||| Sbjct 165627 TTTTACCAGTCAAGGTTTTCACGAAAATCTGCAT 165594 >seq569 Length=200630 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||||||||||||||| || || || |||||||||||||| || || || Sbjct 134620 GCCACCACGAAGACGCAACACCAAGTGAAGCGTCGATTCCTTTTGAATGTTGTAGTCGGA 134561 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| ||||||||||| || || |||||||| ||||| || || || Sbjct 134560 AAGAGTGCGTCCATCTTCCAGTTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGG 134501 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||||| || || | || || || | || | Sbjct 134500 GATACCCTCCTTGTCTTGGAT-TTTTGCCTTGACATTTTCGATGGTATCGGAGGGTTCAA 134442 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || ||||||||||||| |||||||| ||||| ||||| Sbjct 134441 CCTCGAGGGTGATGGTTTTACCGGTTAGGGTTTTCACGAAAATTTGCAT 134393 >seq412 Length=275653 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| ||||| || ||| | ||||| |||||||| || || || Sbjct 82979 TCTTTCTGAATATTATAATCAGAAAGAGTGCGCCCATCTTCGAGTTGTTTTCCCGCGAAA 82920 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||||||||||||| ||||| || | |||||| |||||| |||||| || | | Sbjct 82919 ATTAAACGCTGTTGATCCGGTGGGATTCCCTCTTTGTCTTGGATCTTAGCCTTGACATTT 82860 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 || || || ||| || || | ||||| || || || ||||| ||||| ||| Sbjct 82859 TCGATGGTATCGGAAGGCTCGACCTCAAGAGTTATGGTCTTGCCAGTTAAAGTTTTAACA 82800 Query 34696 AAAATCTGCATGTT 34709 || |||||||| || Sbjct 82799 AAGATCTGCATATT 82786 >seq62 Length=648032 Score = 91.5 bits (100), Expect = 9e-14 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| || || ||||||||||| ||||| ||||| || || | |||||| Sbjct 445521 ACCAACTGGAGGGTTGATTCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCA 445462 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| | || |||||||| |||| || || || | ||| ||| | ||| | Sbjct 445461 AGTTGTTTACCAGAGAAGATTAAACGTTGTTCATCTGGTGGGATTCCTTCCGTATCTTGG 445402 Query 34618 ATCTTTTGTTTTAAC 34632 || ||| | |||||| Sbjct 445401 AT-TTTAGCTTTAAC 445388 Score = 89.7 bits (98), Expect = 3e-13 Identities = 93/120 (78%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| ||||| ||||| || || | ||||||||||||||||| || || Sbjct 445305 TCTTTTTGAATGTTGTAATCAGAAAGAGTACGACCATCTTCAAGTTGTTTACCAGCGAAG 445246 Query 34576 ATTAAAC---GCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632 ||||||| ||||| || || || | ||| ||||||| | ||| ||| |||||||| Sbjct 445245 ATTAAACTTGTTTGTTGATCTGGTGGGATTCCTTCCTTGTATTGGAT-TTTAGTTTTAAC 445187 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 34525 ATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGC 34584 || || ||||||||||| || || | ||||| | || ||||| || ||||||||| Sbjct 445710 ATATTGTAATCTGAAAGGGTACGTCCATCTTCCAATTCTTTACGATGGAAAATTAAACGC 445651 Query 34585 TGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTG 34644 ||||| ||||| || | | ||||||||| ||||| ||||| | ||| || Sbjct 445650 TGTTGATCCGGTGGAATCCTTTCCTTGTCTTGAATCTTAACTTTTACATTTCCAATAGTA 445591 Query 34645 TC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703 || | | | |||||||||| ||| || ||||| || ||||| |||| || || || || Sbjct 445590 TCAGTAGGT-TCCACTTCCAAGGTGATGGTTTTTCCAGTTAAACTTTTTACGAAGATTTG 445532 Query 34704 CAT 34706 ||| Sbjct 445531 CAT 445529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314702454276941