Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq569 165 7e-36 seq241 158 1e-33 seq412 143 2e-29 seq62 109 5e-19 seq104 87.8 2e-12 >seq569 Length=200630 Score = 165 bits (182), Expect = 7e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| ||||| || || || ||||| || ||||| || | || || || || || ||||| Sbjct 134389 CGCAATGCAAATTTTCGTGAAAACCCTAACCGGTAAAACCATCACCCTCGAGGTTGAACC 134448 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||||| | || || | ||||| |||||| |||||||| || || || ||||| || Sbjct 134449 CTCCGATACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAGGGTATCCCACCAGA 134508 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||| |||||||| | ||| || |||||| ||||||| | || ||||||| || Sbjct 134509 TCAACAACGTTTAATCTTCGCTGGTAAACAACTGGAAGATGGACGCACTCTTTCCGACTA 134568 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||| ||||| | || ||||| |||||| | || |||||||| Sbjct 134569 CAACATTCAAAAGGAATCGACGCTTCACTTGGTGTTGCGTCTTCGTGGTGGCAT 134622 >seq241 Length=949647 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || || ||||||| | ||||| || || || Sbjct 167190 ATGCAGATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTTGAGCCATCT 167249 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 167250 GATACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 167309 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| |||||| | ||||| || || |||| ||||||||| Sbjct 167310 CAACGTTTGATCTTCGCCGGTAAACAACTTGAAGATGGTCGTACTCTTTCTGATTACAAC 167369 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | ||||| || ||| | || | ||||| || Sbjct 167370 ATCCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGAAT 167419 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | || || || | || || || ||||||||||| || Sbjct 167418 ATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCCTAGAAGTGGAACCTTCT 167477 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 167478 GATACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 167537 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| |||||||| ||||| || || |||| ||||||||| Sbjct 167538 CAACGTTTAATCTTCGCCGGTAAACAATTAGAAGATGGTCGTACTCTTTCTGATTACAAC 167597 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || ||| | ||||| || ||| | || | ||||| || Sbjct 167598 ATTCAAAAAGAATCAACCCTCCATTTAGTATTGAGGTTAAGAGGTGGAAT 167647 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || |||||| |||| || ||| ||||||| | ||||| || || ||| Sbjct 165822 ATGCAGATCTTCGTCAAAACTTTGACTGGAAAGACTATTACATTGGAAGTTGAGCCATCC 165881 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || |||||||| || ||||| || ||||| |||||| Sbjct 165882 GACACCATAGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 165941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || |||||||||||||| | || |||| |||||||| Sbjct 165942 CAACGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACTCTTTCTGATTACAAT 166001 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| ||| | ||| | ||||| || Sbjct 166002 ATCCAAAAGGAATCAACTCTTCATTTGGTATTGAGATTGAGAGGTGGAAT 166051 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || || |||||||| | ||||| || || || Sbjct 166050 ATGCAGATCTTTGTCAAAACATTGACTGGAAAAACTATTACTTTGGAAGTTGAGCCATCT 166109 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| || || |||||||| || || || |||||| Sbjct 166110 GATACCATTGAAAATGTTAAAGCTAAAATCCAGGATAAAGAAGGAATTCCTCCAGATCAA 166169 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || ||||| | || || |||||||| |||||| | || |||| ||||||||| Sbjct 166170 CAACGATTAATCTTTGCTGGTAAACAATTAGAAGACGGACGCACTCTTTCTGATTACAAC 166229 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | |||||||| ||| | ||| | || || || Sbjct 166230 ATCCAAAAAGAATCAACCCTCCATTTGGTGTTGAGATTGAGAGGAGGAAT 166279 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | || || || | || || | ||||||||||| || Sbjct 167646 ATGCAAATCTTCGTAAAAACATTAACTGGAAAAACCATCACCTTAGAAGTGGAACCTTCT 167705 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||| |||||||| ||||| || ||||| |||||| Sbjct 167706 GATACTATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAA 167765 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || |||||||||||||| | ||| |||| |||||||| Sbjct 167766 CAGCGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGACGTACCCTTTCAGATTACAAT 167825 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | ||||| ||| | || | || ||||| Sbjct 167826 ATCCAAAAGGAATCCACTCTGCATTTAGTTCTTCGCCTACGTGGTGG 167872 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || || | || || | || || || || || Sbjct 165594 ATGCAGATTTTCGTGAAAACCTTGACTGGTAAAACCATCACGTTAGAGGTCGAGCCATCT 165653 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| || |||||||| || || ||||| || ||| Sbjct 165654 GACACTATTGAAAATGTGAAGGCGAAAATCCAGGACAAAGAGGGGATCCCACCAGACCAA 165713 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||| ||||| | ||| ||||||||||||| Sbjct 165714 CAACGGTTGATCTTTGCCGGAAAACAATTAGAAGATGGACGTACCCTTTCCGATTACAAT 165773 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| ||| | ||| ||||||| || Sbjct 165774 ATCCAAAAGGAATCAACTCTCCACTTGGTATTGAGATTGAGGGGTGGAAT 165823 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | || || || | || || | ||||| ||||| ||| Sbjct 166278 ATGCAAATTTTTGTTAAGACCTTAACTGGTAAAACCATCACATTGGAAGTCGAACCATCC 166337 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || ||||| || ||||| || ||||| |||||| Sbjct 166338 GACACCATTGAAAATGTTAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAA 166397 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || ||||| | || || |||||||| ||||| | || |||| ||||||||| Sbjct 166398 CAACGATTAATCTTTGCTGGTAAACAATTAGAAGATGGGCGCACTCTTTCTGATTACAAC 166457 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||||| || ||| | ||| | || || || Sbjct 166458 ATCCAGAAAGAATCCACCCTTCATTTAGTATTGAGATTGAGAGGAGGAAT 166507 >seq412 Length=275653 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| | || |||||| | || |||||||| || || || ||| Sbjct 82789 ATGCAGATCTTTGTTAAAACTTTAACTGGCAAGACCATAACTCTTGAGGTCGAGCCTTCC 82848 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 82849 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAAGAGGGAATCCCACCGGATCAA 82908 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||| || |||||| | ||||| | || |||| ||||| || Sbjct 82909 CAGCGTTTAATTTTCGCGGGAAAACAACTCGAAGATGGGCGCACTCTTTCTGATTATAAT 82968 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || || || ||||| || | | ||||| ||||| Sbjct 82969 ATTCAGAAAGAATCAACGTTGCATTTAGTCCTAAGATTGCGTGGTGG 83015 >seq62 Length=648032 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 26994 ATATTTGTAAAAACTCTGACCGGC-AAGTCTATTACTCTTGAAGTGGAACCGTCCGACTC 27052 || || ||||||||| | || || || || || || | | ||||||||| || || | Sbjct 445319 ATCTTCGTAAAAACTTTAACTGGAGAAATC-ATCACCTTAGGAGTGGAACCTTCTGATAC 445377 Query 27053 GATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG 27112 ||||| | || ||| ||||| ||||| | ||||| || ||||| ||| |||| || Sbjct 445378 CATTGAAAATGTTAAAGCTAAAATCCAAGATACGGAAGGAATCCCACCAGATGAACAACG 445437 Query 27113 TTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCA 27172 |||||| | | | || |||||| | ||||| || || |||| |||||||||||||| Sbjct 445438 TTTAATCTTCTCTGGTAAACAACTTGAAGATGGTCGTACTCTTTCTGATTACAACATTCA 445497 Query 27173 AAAGGAGTCGACCTTACATTTGGT 27196 ||| || || ||| | || ||||| Sbjct 445498 AAAAGAATCAACCCTCCAGTTGGT 445521 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||||| | | || || || | || || | ||||||||||| | Sbjct 445529 ATGCAAATCTTCGTAAAAAGTTTAACTGGAAAAACCATCACCTTGGAAGTGGAACCTACT 445588 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | |||| | || ||| || ||||||||||| ||| | || ||||| |||||| Sbjct 445589 GATACTATTGGAAATGTAAAAGTTAAGATTCAAGACAAGGAAAGGATTCCACCGGATCAA 445648 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | | | ||| |||||||||| | ||| |||| |||||||| Sbjct 445649 CAGCGTTTAATTTTCCATCGTAAAGAATTGGAAGATGGACGTACCCTTTCAGATTACAAT 445708 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || | ||| | || || | |||| ||| | || | || ||||| Sbjct 445709 ATCTATAAGAAATCTACTCTGTATTTAGTTATTCGCCTACGTGGTGG 445755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGC---GTTTAATATACGCCGGC 27128 ||||| ||| |||| ||||| || ||||| |||||||| ||||||| | ||| || Sbjct 445196 AAAATCCAATACAAGGAAGGAATCCCACCAGATCAACAAACAAGTTTAATCTTCGCTGGT 445255 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 |||||| | ||||| || || |||| ||||||||||||||||| || || ||| Sbjct 445256 AAACAACTTGAAGATGGTCGTACTCTTTCTGATTACAACATTCAAAAAGAATCAACC 445312 >seq104 Length=333490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 49824 ACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGC 49883 ||| ||||||||||||||||||||| | ||||||||||| || | ||||| || ||||| Sbjct 112391 ACCGGGTAAAAGACATTGGTTGAAAGTCAAAAAAGACTATTTATTTGATGGGGCGATGGC 112450 Query 49884 CGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTA 49919 ||||| | ||||| | ||||| || || ||||| Sbjct 112451 TGATAGTGCAGATTTAATTGTTTTAGGGGCCTGGTA 112486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434879926031040