Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq295 118 9e-22 >seq295 Length=373786 Score = 118 bits (130), Expect = 9e-22 Identities = 347/524 (66%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596 ||||| | ||||||||||| || || | ||| || ||||| | |||||||||||| Sbjct 5799 CCTGTAACATGAGCAATCATATAAGTAAGTAAAGCATAACTGGCGATATTAAAAGGAACT 5740 Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656 || |||||||| || ||||| | || || ||| ||||| || || || | || ||| Sbjct 5739 CCAAGACCCATATCCGCTGAACGTTGATATAATAAACAAGAAAGTTCTCCTTCGGCTACA 5680 Query 118657 TAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT-----GGAACTCAGTTGGGCAG 118711 ||||| ||| || ||||| ||||| | |||| ||| ||| | ||| Sbjct 5679 TAAAATTGAACTAAACAATGACAAGGAGGTAATGCCATTTTAGGGATATCAATGGGG--- 5623 Query 118712 GATTCCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTA-TACCCTCAATT 118770 ||||| || | || ||||| | ||||| || | || || | ||| Sbjct 5622 --TTCCAAGCACACATAATTATCCTTCGATCAGTTGGTT-TATTTTTAATAGTATTAATA 5566 Query 118771 AAATTC-TGAATCTGATCCACACCCTTTCCAGTATACTGAGACTCGCATCCTTT-ATATT 118828 | || | | ||| ||||| | ||| || |||||| | || | |||| | ||||| Sbjct 5565 ACATCCATTAAT-TGATCAATACCTTTATTAGTATAATCAGTGT-GCATATTACCATATT 5508 Query 118829 CTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGGGACCTAA 118888 | || ||| || |||||||||||||||||||| ||| |||| ||| || | | | Sbjct 5507 CAGCTCCATAATGTCTCCATTGAAAACCATAAATAGGTCCCAAATCGCCTTCTTCACGAT 5448 Query 118889 AATCTAAACCTACTTTTCTCTGAA-ATTCTTTTGACCCATTAGCATTCCAAATAGCAACT 118947 | |||||| | || ||| || |||| | | | || | |||||||||| || Sbjct 5447 CAGTTAAACC-AATTGAGTCTAAATATTCCCTGGTGCTGTTGGGATTCCAAATATTCACA 5389 Query 118948 CCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCA 119007 ||| ||||| | ||| |||| ||| ||| || || | ||||| | ||| || ||| Sbjct 5388 TTTTTCTTTGCTAAATCTTTAGCGTTGGTACTCCCTCTAATGAACCATAAAAGTTCTTCA 5329 Query 119008 ACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 || || || | ||||||||| ||||||||| || | ||||| Sbjct 5328 ACTACACCGCGCCAAAAAACGCGTTTTGTTGTTAATAAAGGAAA 5285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414441050987428