Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1159 435 3e-117 >seq1159 Length=103958 Score = 435 bits (482), Expect = 3e-117 Identities = 628/878 (72%), Gaps = 6/878 (1%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| ||||||||| || || || || ||||||||||| || || Sbjct 49822 AACACCAGCTTTTTGGTACTCCCCAACCTTTTTCTCAAAGAAATTAGTACGCCCATCATC 49881 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || ||| | |||||||||||| |||||||||| ||||| ||||||||| || Sbjct 49882 AGATATAAGATTCATAAAATCAAATGGATTAGTTGAATTGTATAATTTTTCACAACCAAG 49941 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | || || || || ||||| || || ||||| ||| | | ||| || || Sbjct 49942 TTCAGTTAATAAACGATCGGCAACAAACTCAATGTACTGCGACATTAAATTGCAATTCAT 50001 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || ||||| || || || || || | || ||||| || ||||| || || || || Sbjct 50002 CCCGATTAAACTAACCGGAAGAGCATCAGTTAAAAATTCCTGTTCAATTTCAACCGCATC 50061 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAATA 4545 || ||| |||| || || || || || || | |||| ||| |||||||| Sbjct 50062 GCGAATAATACTCGTTATACGTTCCTTTGACGGCTT-TTGAATAAGATATGTAAACAATA 50120 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 |||| ||||| || |||| |||||||| || | ||| | ||| ||||||||||||| Sbjct 50121 AACAAGCAAATTCGTAATGTAAACCTTCATCGCGCGAAATTAATTCATTAGAAAACGTTA 50180 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 | |||||||||||||| | |||||| | |||||| ||||| ||||| || ||||||| Sbjct 50181 AACCGGGCATTAAACCCCGCTTTTTCAACCAAAAAATAGCTGCAAAACTTCCCGAAAAGA 50240 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTT 4725 | || || || ||||| ||||| || ||||| || ||| || | | | ||| || Sbjct 50241 AAATACCCTCAACGGCCGCAAAAGCAACTAAACGTTCCCCAAAAGT-CGCGTTTTTACTA 50299 Query 4726 -TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||||| ||||| ||||| | |||||| || ||||| || |||| || | || ||| Sbjct 50300 CTAATCCAATTTAAAGCCCAATCAGCTTTCTTTTTAACACAAGGAAGCGTTTCGATGGCG 50359 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 |||||||| ||||| ||| || ||||||||| || |||| | ||| ||| Sbjct 50360 TTAAATAAAAATTCTTTTTGTTTTGGATCAGAAATATAAGTTTCAATTAACATGCTGTAC 50419 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 |||||||| || |||||||| |||||||| ||||| |||||||| || | ||||| ||| Sbjct 50420 ATTTCAGAGTGAATATTTTCAATAGCAATTTGAAAACCGTAAAAACAACGTGCTTCCGTT 50479 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 || |||||||| | || ||| | ||| ||||| ||||||||||| || || ||| || Sbjct 50480 ACCTGAACTTCTTGACTAAAACGTTCAACTAAATTTTCGTTTACAATTCCATCAGAAGCA 50539 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA-GGCTTAAGTTTTTTCCA 5023 |||||||| || |||||||| || ||||| | |||||| | | |||| | ||| ||| Sbjct 50540 GCAAAAAAGGCTAAAACATGGGAGATAAAATGACGTTCGTTATCGGTTAA-TGTTTGCCA 50598 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | |||||| | | ||| ||||||||| |||||||| || |||||||| | Sbjct 50599 ATGATTGAGATCTTTCGAAAGATCTACTTCTTCAGTGGTCCAAAATGAAGCTTCCGCCTG 50658 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||||| | | ||||||||||||||||| ||| |||| Sbjct 50659 TTTGTATTTCGCCCAAATATCAGGATACTCAATGGGAA 50696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427012766571641