Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ooceraea_20biroi_20[refseq_20GCF_5F000611835.1_202014-04-08] 4,579 sequences; 212,825,769 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq921 96.9 4e-15 seq542 87.8 2e-12 >seq921 Length=431717 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||| |||||| ||| || | |||||| ||||| || ||||| || || || ||| Sbjct 294432 TTTTCAAATCCTAATGCAACGAACAATCTGTCTGCAACAAATTCAATGTAAGTACACATG 294373 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | | ||||||||||||||| |||| |||||| | ||| | || | ||||||| ||| Sbjct 294372 AGTGTACAATTCATTCCTATCAGTTCAACTGGCAACGCCTCTGTTAAGAATTCTTTTTCG 294313 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGG---ATGTAAT 33563 || || |||| |||| || || | ||| ||| || ||| |||| Sbjct 294312 ATTTCCACAGCATCCATTATTATTGATTTTACG---CGCTCAAACGTTGGCTTTTGTATA 294256 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | |||||||||||| |||||||| |||||||| || | |||| Sbjct 294255 ATATGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 294213 >seq542 Length=247308 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693 ||||| | |||| || |||||| || ||||| ||||||| ||||| ||||| | | Sbjct 50107 TCATAAGTACCTTTCTCAGCAGCTAATTCGCAACTAGCCTCTAGAGCACCATAATACAGG 50166 Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAG 62753 ||||| ||||| | |||| || || | || || ||| ||||||||||| | | Sbjct 50167 GTTTCGAAGATTTGAATATTGAGTTCCTTAGCATCTTTGCTCTCAAATGGATACCTCATT 50226 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 | || || || || ||||||||||| || |||||||| Sbjct 50227 AAGATGAATGCATCTGCTAATCCTTGTACGCCAATACC 50264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629781550815120