Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ooceraea_20biroi_20[refseq_20GCF_5F000611835.1_202014-04-08] 4,579 sequences; 212,825,769 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq921 95.1 1e-14 seq542 89.7 5e-13 >seq921 Length=431717 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||||| ||||||||||| || || || || || || |||||||| || |||||||| Sbjct 293658 ATACATTTCAGAATGAATATTCTCGATGGCAATCTGGAAACCATAGAAGCAGCGTGCCTC 293599 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | || || | ||||||||| || ||||||||| |||||||| || Sbjct 293598 TGCGATTTTCACTTCTTGACTAAATCTTTCAATTAGATTCTCATTGACAATACCGTCGGA 293539 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 || ||||| || ||||| | || ||| || ||| ||||||| Sbjct 293538 AGCCGCAAAGAACGCTAGAACGTGAGATATGAAATATCTTTCGTC 293494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||||| | ||||| | || ||||| ||||| || ||||| || || | || Sbjct 294435 ACCTTTTCAAATCCTAATGCAACGAACAATCTGTCTGCAACAAATTCAATGTAAGTACAC 294376 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||||||||| ||||| || || || || | || |||| || || || ||| Sbjct 294375 ATGAGTGTACAATTCATTCCTATCAGTTCAACTGGCAACGCCTCTGTTAAGAATTCTTTT 294316 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTA-- 11609 || || | || ||||| || ||||| || ||| | || | | | ||| | | Sbjct 294315 TCGATTTCCACAGCATCCATTATTATTGATTTTA---CGCGCTCAAACGTTGGCTTTTGT 294259 Query 11610 ATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 |||| |||||||||||||||||| |||||||| |||||||| || Sbjct 294258 ATAATATGTTTAAACATTAAACATGCAAAATCGCAATGTAATCC 294215 >seq542 Length=247308 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 37404 AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 ||||| ||||||||||| ||||| || ||||||| | |||||||| ||||| ||||| Sbjct 50127 AGCTAATTCGCAACTAGCCTCTAGAGCACCATAATACAGGGTTTCGAAGATTTGAATATT 50186 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 | | || || |||| ||| || |||| ||| | || ||| || || |||| || || Sbjct 50187 GAGTTCCTTAGCATCTTTGCTCTCAAATGGATACCTCATTAAGATGAATGCATCTGCTAA 50246 Query 37524 ACCCTGAACACCGATACCTATG 37545 || || || || |||||| || Sbjct 50247 TCCTTGTACGCCAATACCTGTG 50268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468497982811760