Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ooceraea_20biroi_20[refseq_20GCF_5F000611835.1_202014-04-08] 4,579 sequences; 212,825,769 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq914 105 5e-18 seq6 93.3 3e-14 >seq914 Length=660061 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| ||||| || |||| ||| | |||| || ||||| | ||||| ||||| Sbjct 533318 GCCACCACGAAGTCTCAAAACCAGATGCAGAGTGGATTCTTTTTGAATGTTGTAGTCGGA 533259 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||| || |||| || | ||||| |||||||| ||||||||||| ||||| | || Sbjct 533258 AAGTGTGCGGCCGTCCTCGAGCTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGAGG 533199 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||||||| | ||| |||||| ||| || || Sbjct 533198 GATTCCTTCCTTGTCCTGGATTTTAGCTTTGACGTTTTCAATTGTGTCCGAAGCTTCCAC 533139 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| || || || || ||||| Sbjct 533138 CTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 533091 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| ||| | |||||||| | ||| ||||| || | ||||||||||| Sbjct 533774 GCCACCACGCAATCTAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAATCGGA 533715 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||||| |||||||| ||||||||||| ||||| | || Sbjct 533714 AAGCGTGCGGCCGTCCTCGAGCTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGAGG 533655 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| | ||||| | | | || || || ||||| Sbjct 533654 GATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCGATCGTATCTGACGCTTCGAC 533595 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||| ||||| ||||||||||| Sbjct 533594 TTCCAATGTAATGGTTTTGCCAGTAAGAGTCTTCACGAAAATTTGCAT 533547 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||| || ||||| |||||| |||| || | || ||||| || ||| Sbjct 534193 TCCTTTTGAATATTGTAGTCTGACAAGGTACGTCCGTCTTCAAGCTGCTTGCCCGCGAAA 534134 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCT 43037 |||| || || ||||| | || | |||||||| || |||| | ||||||| | Sbjct 534133 ATCAGTCTTTGCTGATCAGGAGGGATCCCTTCTTTATC-CTGAATTTTTGCTTTGACATT 534075 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| || ||||| || | || || ||||| || || ||||||||||| Sbjct 534074 TTCAATGGTGTCTGATGCTTCGACTTCCAATGTGATTGTTTTGCCAGTAAGAGTTTTCAC 534015 Query 43098 AAAAATTTGCAT 43109 || |||||||| Sbjct 534014 GAAGATTTGCAT 534003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| || | |||||||| | || |||||||| | ||||| || || Sbjct 534002 GCCACCACGCAACCTAAGAACCAAATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCAGA 533943 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | |||||| || || || ||||| | ||||| || | || Sbjct 533942 GAGCGTGCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATCAACCTTTGTTGGTCCGGTGG 533883 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||||||| | ||| |||||| || ||||| Sbjct 533882 GATTCCTTCCTTATCTTGGATTTTTGCTTTGACATTTTCAATTGTGTCTGATGCTTCGAC 533823 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||| ||||| ||||||||||| Sbjct 533822 CTCCAAAGTGATTGTTTTGCCAGTAAGAGTCTTCACGAAAATTTGCAT 533775 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| |||||| || | ||||||||||| Sbjct 533089 CCGCCACGAAGCCGAAGAACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCGGAA 533030 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||||| || || || ||||||||||| ||||| | || Sbjct 533029 AGCGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCTGGGGGG 532970 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | || || | ||| ||||| |||||| || Sbjct 532969 ATTCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTCAATCGTGTCCGAAGCCTCAACT 532910 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| || || | || ||||| ||||| ||||| Sbjct 532909 TCAAGGGTTATGGTTTTCCCCGTCAACGTCTTCACGAAAATCTGCAT 532863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||||| || | |||||||| | ||| ||||| || | ||||||||||| Sbjct 533546 GCCACCACGCAACCTAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAATCGGA 533487 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||||| |||||||| ||||||||||| ||||| | || Sbjct 533486 AAGCGTGCGGCCGTCCTCGAGCTGTTTTCCGGCAAAGATCAATCGCTGCTGATCTGGAGG 533427 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| | ||||| | | | || || || ||||| Sbjct 533426 GATTCCTTCCTTGTCCTGGATTTTTGCCTTGACATTTTCGATCGTATCTGACGCTTCGAC 533367 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||| || || || || ||||| Sbjct 533366 TTCCAATGTAATGGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 533319 >seq6 Length=1016685 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 42920 CCTTT-TGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| || | ||| ||| | || |||| |||||||||||||||| Sbjct 447903 CCTTTCTGGATATTGTAATCCGAAAGTGTGCGTCCATCTTCCAGTTGTTTGCCGGCAAAA 447844 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | ||||| ||||| | || | || || || || |||| |||| || | Sbjct 447843 ATAAGCCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTCACATTT 447784 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| |||||| || || | || || || || || || || ||||||||| Sbjct 447783 TCAATGGTATCGGAAGCCTCTACCTCGAGGGTAATGGTCTTACCCGTGAGGGTTTTCACA 447724 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 447723 AAGATCTGCAT 447713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381348317073582