Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ooceraea_20biroi_20[refseq_20GCF_5F000611835.1_202014-04-08] 4,579 sequences; 212,825,769 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq921 104 3e-17 seq542 98.7 1e-15 seq132 86.0 8e-12 >seq921 Length=431717 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42561 CTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCAT 42620 ||||||||||||| |||||||| || || | |||||||| ||||| | ||| |||||| Sbjct 293305 CTACTTCTTCTACAGTCCAAAAGGAAGCCACGGCCTTTTTGTACATGTCCCAAATATCAG 293246 Query 42621 GATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 |||||||||| |||||||| ||||| | ||||||| Sbjct 293245 GATATTGAATAGGGAAAATTACAAAGCGATTTGGA 293211 >seq542 Length=247308 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||| ||| ||||| ||||||| || |||||||| | ||||||||| || | ||||| Sbjct 50128 GCTAATTCGCAACTAGCCTCTAGAGCACCATAATACAGGGTTTCGAAGATTTGAATATTG 50187 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 || || | || || ||| ||||||||||| | | | || || || ||||||||| Sbjct 50188 AGTTCCTTAGCATCTTTGCTCTCAAATGGATACCTCATTAAGATGAATGCATCTGCTAAT 50247 Query 71530 CCTTGAACGCCAATACC 71546 ||||| ||||||||||| Sbjct 50248 CCTTGTACGCCAATACC 50264 >seq132 Length=3977268 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| || || ||||||||||||| ||| || || | |||| || |||| | Sbjct 1025127 CACTAAAGCTCTTCTTGGTTTCCTTGTGTAAATTAGACACATCAATTCGTGCCGCTAATA 1025068 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || ||||| ||||| | || | |||||| || ||||| ||||| ||| | |||| Sbjct 1025067 TTGCGTAATCAGGATGATTAGTTGCCATAGTGGCCGCAATTTCAGCTGCAAGATTATCCA 1025008 Query 72881 ATTCTACCGTTGTTACTCCATTATATA 72907 || | || || ||||||||| ||||| Sbjct 1025007 ATGCGACTGTAGTTACTCCAGAATATA 1024981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671100785670040