Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq955 282 5e-71 >seq955 Length=106330 Score = 282 bits (312), Expect = 5e-71 Identities = 1132/1765 (64%), Gaps = 28/1765 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 52866 |||||||| || | | || | || |||||||| | || || ||||| || ||||| | Sbjct 60339 GTGAATTGGATCGCGTTCGCA-GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAA 60281 Query 52867 ACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTAT 52926 ||| | ||||| ||| ||| || || ||||| ||| ||| | || || || | Sbjct 60280 ACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCAC 60221 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||| || || | || || || || || || || || || | || || ||||| | || Sbjct 60220 ATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAAT 60161 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 53045 | ||||||| || ||| ||||| | || || || || || |||| | |||| |||| Sbjct 60160 GCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTATT-TCTTTGGGAA 60102 Query 53046 G-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 53102 | || |||| || | ||||||| | || || || || || || |||| Sbjct 60101 TAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATGATTAGGTTTTTCATATCTTCAT 60042 Query 53103 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 53162 ||| || | |||||| | | ||| || ||||| | || || || || || || | Sbjct 60041 CCCACAAGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGC 59982 Query 53163 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 53222 | |||| || || || ||| || ||| ||| | || || | ||||| ||||| | Sbjct 59981 CCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGC 59922 Query 53223 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 53282 | | ||||| || || || || || ||||| ||||| | || | |||| |||| Sbjct 59921 CGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGAC 59862 Query 53283 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 53342 | | | | |||||| ||||| |||| |||| | ||| || || | || Sbjct 59861 CATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGT 59802 Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTAT 53401 ||| | || || | || | | || | || || || || || Sbjct 59801 TCCACATGTCGTATTGCAAGATGCCCTGGCTCACCGGAC-AGCCCGGGTAAGTTTCATAA 59743 Query 53402 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 53461 || |||||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 59742 ACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGTAAATGGTTTCG 59683 Query 53462 AAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 53519 || |||| | ||| | |||| ||| | || ||| | || | | || | Sbjct 59682 AAAATCTGTTGATTCAA--CTTGATTGCAGCTTCACTTTCATACGGGATACGCATCAGGA 59625 Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579 || || || || |||||||||||||| || ||||| || | ||| | | | || ||| Sbjct 59624 CGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATGTTTGAGT 59565 Query 53580 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG-ACA 53638 | | |||||||| || || || | || | ||||| ||||| || || || ||| || Sbjct 59564 TCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATT-CTGCACG 59506 Query 53639 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAA 53694 | | ||| || || || || || ||| | | | ||||| ||| | || || Sbjct 59505 ACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTC-ATCATTGACGAA 59447 Query 53695 CATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTG 53754 |||||| ||| | || |||| |||||| ||||| || |||| | || || | Sbjct 59446 TCTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGTGTACTC 59387 Query 53755 TATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 53814 | ||||| ||||| |||||||| || ||||| || || | || | |||||| || || Sbjct 59386 AACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATTGCTTTT 59327 Query 53815 TTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTAT 53874 |||| || || || || ||||| ||| |||| || || ||||| | || | ||| || Sbjct 59326 ACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGCTTCAAT 59267 Query 53875 AATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCG 53932 || || ||||| | || | || | | | | | || || |||||||| || Sbjct 59266 GATAGCCTTCCACAAAACTTGCGCTCTCACTT--GCCTCACATATCGTTTCTCTTGTTCA 59209 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 ||| | ||| || || |||||||| ||||| | | ||| || ||||| || Sbjct 59208 TATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGACAGTCG 59149 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | || ||||| | ||| || |||| || |||| |||||| || | || || Sbjct 59148 TGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAGTCTGGT 59089 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 ||||| || | ||| || ||||| | | | |||||| || || || || || || Sbjct 59088 ATCCAGAGCCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTTTTCTTG 59029 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 ||||| | |||| | | ||||| | |||||||| || | ||| | | | | || Sbjct 59028 AGATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAGGCGCCG 58969 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || |||||||| || || || || | ||| ||||| ||||| ||||| || | | ||| Sbjct 58968 GGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGGAGCATG 58909 Query 54233 GGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT- 54291 || | | || ||||| | || ||||| |||| ||| ||| ||| |||| || || Sbjct 58908 GGTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCGCGGATG 58849 Query 54292 -ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | | || ||| | || || || || || ||| ||||| | ||||| |||| | Sbjct 58848 CAGTG-TACGTGAACG-CCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGA 58791 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 ||| || ||||||||||| || || || ||| ||||| | || || ||| || | Sbjct 58790 GCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGA 58731 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 ||| | || || |||| || | || || |||||||| || | || | Sbjct 58730 GCTGGGGGCGGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGTACTTCT 58671 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 | || || || |||||||| | |||||| ||||| || ||| ||||| || | | Sbjct 58670 CTGACAGCAGGTTGTACGTGTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGCCGATGG 58611 Query 54531 CGACACGCATTAACATGTGCTGAGG 54555 || ||||| | ||||||||| || Sbjct 58610 AAACTCGCATCAGCATGTGCTGGGG 58586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 54777 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAAT 54836 ||||||| || || ||||| | || |||| ||| | ||| || ||||||||||| || | Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833 Query 54837 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCG 54896 ||||||| | || || || || ||| | || || | || | ||||||||||| | Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773 Query 54897 TTGTTACTCCATTATATATTCCTTGGATAACCTTCA 54932 | || |||||| |||||| || ||| ||||||| Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593530117362480