Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq754 230 2e-55 seq3664 104 2e-17 seq3481 100 2e-16 seq4530 84.2 2e-11 seq3754 84.2 2e-11 >seq754 Length=177731 Score = 230 bits (254), Expect = 2e-55 Identities = 489/728 (67%), Gaps = 9/728 (1%) Strand=Plus/Plus Query 105772 TTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGC 105831 || ||||| || |||||||| ||||| ||||| || || || | | | | |||| || Sbjct 50885 TTAGACCAGGCTCCTTTAAAGTCGTAGCTCATCAGGAAGATATGGTCCATGTACTTCTGG 50944 Query 105832 GCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAAT 105891 || || ||||| ||||| |||||||| |||| || || || ||| || | Sbjct 50945 GCAGCGCTGTAGTCGACCACTTGGATCTTGTCCCAACCGGCACTGATGGCGGAAGTCAGC 51004 Query 105892 TCGTAAACCCTGCCGGTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAAC 105951 ||||| | | || |||| || || || | ||||| | || | |||| || Sbjct 51005 TCGTATTTCTTACCAGTTTCAGCGGATAGCTCATTGAGCATGTCACGTATTTCCTTCATG 51064 Query 105952 AACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGCC--CAACGAC-GGGTTAGCCCCT 106008 | || ||| | | | |||||| || ||| ||| | | ||||| || ||| Sbjct 51065 AGTTCAACGTA------GACATGGCCGTCCTCAGGGCCTCCAAGGTCAGGGTTGGCACCT 51118 Query 106009 TTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGA 106068 ||||| || || |||||||||||||| || ||||| || ||||||||||| |||||| Sbjct 51119 TTGCCTCCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCAAGTTTGCAGG 51178 Query 106069 AATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCGTGCATAAAATAAAAT 106128 || || || ||||| | || ||| || ||| || || | | ||| | ||| Sbjct 51179 AAGTCTTTCACCGATGCGACGAAACGGTCTCTCTTGGTCTTGTCATTTAAGAAAAAGAAT 51238 Query 106129 GGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAAT 106188 || || | || |||||||| || || || || || ||||| | | || || ||| | Sbjct 51239 GGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGATTTTCAGGTCAGGTTTCGCTTGT 51298 Query 106189 TTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCT 106248 || | ||| | ||| || ||||||||||| || || |||||||||| |||| |||| Sbjct 51299 TTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAGGTTCGTTCCAAGAAGACAGACCT 51358 Query 106249 TTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGT 106308 || |||||||| || | ||| ||||| ||||| || || | |||||||| || || || Sbjct 51359 TTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGATTGTCACTTTGAAGTCCTCTCGG 51418 Query 106309 CCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTT 106368 || |||| || | ||||| || || || || || ||| || | |||||| Sbjct 51419 CCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTTCGATCTCCTTCAAACTGTCGTTA 51478 Query 106369 ATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAG 106428 || ||||| || ||||| || || |||||||| |||| | || | | |||||| | Sbjct 51479 ATGCCATCACCTCCGCAAATTGGGATGAAACCGTACAGGAGATGCGTGAGATTTGGTACT 51538 Query 106429 GGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCG 106488 || | ||| || ||||| || | |||||| ||||| || || ||||| || | Sbjct 51539 GGGATACGGTCCACTGGAAACTTTCTGGGGTACACGCCCCATTCGACGAAGTAAGCTCCC 51598 Query 106489 ACAATTTT 106496 |||| ||| Sbjct 51599 ACAACTTT 51606 >seq3664 Length=101255 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || |||| ||||||||||| || |||| ||| | | Sbjct 93866 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACACTCGAAGTAGAAGCTTCG 93925 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || ||||| | ||| ||| || Sbjct 93926 GACACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAGGAAGGCATACCCCCAGACCAG 93985 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||| |||||||| || || ||||| |||||| | || | |||| |||||| Sbjct 93986 CAGAGACTCATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACCCTCTCCGACTACAAT 94045 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||| ||||||||| |||| || || | |||||||| Sbjct 94046 ATCCAGAAGGAATCCACTCTTCACTTGGTATTGCGTCTCCGAGGAGG 94092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| ||| ||||| || | ||||| || || |||||||| ||| Sbjct 94643 GACAAAGAAGGAATCCCCCCAGACCAACAGCGATTGATCTTCGCTGGAAAACAACTTGAA 94702 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || | | ||||||||||| ||||| ||||| ||||||||| |||| || Sbjct 94703 GATGGCCGTACCCTTTCTGATTACAATATCCAGAAAGAATCCACTCTTCACTTGGTATTG 94762 Query 29175 CGATTACGAGGAGG 29188 || | ||||| || Sbjct 94763 CGTCTCCGAGGCGG 94776 >seq3481 Length=53562 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| ||||||| | || || || ||||| ||| || ||| || Sbjct 24049 AAAATGCAGATTTTCGTCAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTGGAGGCC 24108 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | | ||| || ||| ||||| || ||| | || || Sbjct 24109 TCGGACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCGGAC 24168 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || | || ||||| || |||||||| ||||||||| | || || |||||||| Sbjct 24169 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGATTAC 24228 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||||||||||||| ||||| | | || ||||||| Sbjct 24229 AATATCCAGAAGGAATCTACTCTTCACTTGGTGCTCAGGCTAAGAGGAGG 24278 >seq4530 Length=43051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| || | ||| ||| || || |||||||||||||| || ||||| || ||| Sbjct 14052 GACAAAGAGGGCATTCCCCCAGACCAGCAGAGACTTATCTTTGCCGGAAAACAGCTAGAA 13993 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | || || | || ||||| || ||||||||||||||||| ||| |||| Sbjct 13992 GATGGCCGCACACTGTCAGACTACAACATCCAGAAGGAATCTACTCTACACTTGGT 13937 >seq3754 Length=50117 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| ||| ||||| || | ||||| || || |||||||| ||| Sbjct 181 GACAAAGAAGGAATCCCCCCAGACCAACAGCGATTGATCTTCGCTGGAAAACAACTTGAA 240 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || | | ||||||||||| ||||| ||||| ||||||||| |||| || Sbjct 241 GATGGCCGTACCCTTTCTGATTACAATATCCAGAAAGAATCCACTCTTCACTTGGTATTG 300 Query 29175 CGATTACGAGGAGG 29188 || | ||||| || Sbjct 301 CGTCTCCGAGGCGG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428201309878655