Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq754 253 2e-62 seq3664 98.7 8e-16 seq3481 91.5 1e-13 >seq754 Length=177731 Score = 253 bits (280), Expect = 2e-62 Identities = 356/500 (71%), Gaps = 0/500 (0%) Strand=Plus/Plus Query 97764 GGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATCAAAAAATTTC 97823 ||||| || |||||||| || || || |||||||||| || |||||||| || |||||| Sbjct 51107 GGGTTGGCACCTTTGCCTCCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 51166 Query 97824 CACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTCAACGTCGTGC 97883 || ||||| || || || ||||| | || ||| || ||| || ||| | Sbjct 51167 CAAGTTTGCAGGAAGTCTTTCACCGATGCGACGAAACGGTCTCTCTTGGTCTTGTCATTT 51226 Query 97884 ATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAGATGT 97943 | |||| |||| || || | ||| |||||||| || || || || || ||||| || | Sbjct 51227 AAGAAAAAGAATGGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGATTTTCAGGTCA 51286 Query 97944 GGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGGTTCGTTCCAA 98003 || || ||| |||| | ||| | || || |||||||||||||| |||||||||||| Sbjct 51287 GGTTTCGCTTGTTTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAGGTTCGTTCCAA 51346 Query 98004 GCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGATGGCAACTTTG 98063 | |||| || || |||||||| || | ||| ||||| ||||| ||||| | |||||| Sbjct 51347 GAAGACAGACCTTTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGATTGTCACTTTG 51406 Query 98064 AAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGGTATTGTTTTG 98123 || || || || || ||||| || ||||||||||||| ||||| || || || Sbjct 51407 AAGTCCTCTCGGCCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTTCGATCTCCTTC 51466 Query 98124 AGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAACAAGTGCGAT 98183 | |||||| || ||||| || ||||| || || ||||||||||||| | |||| Sbjct 51467 AAACTGTCGTTAATGCCATCACCTCCGCAAATTGGGATGAAACCGTACAGGAGATGCGTG 51526 Query 98184 AAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACCCCACTCGACA 98243 | |||||| | || | ||| || ||||| | | |||||| ||||| ||||| Sbjct 51527 AGATTTGGTACTGGGATACGGTCCACTGGAAACTTTCTGGGGTACACGCCCCATTCGACG 51586 Query 98244 AAGTACGCAGCGACAATTTT 98263 ||||| || | |||| ||| Sbjct 51587 AAGTAAGCTCCCACAACTTT 51606 >seq3664 Length=101255 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || |||| ||||||||||| || |||| ||| | | Sbjct 93866 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACACTCGAAGTAGAAGCTTCG 93925 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| || || ||||| | ||| ||| || Sbjct 93926 GACACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAGGAAGGCATACCCCCAGACCAG 93985 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || || ||| | |||||| | || | |||| |||||| Sbjct 93986 CAGAGACTCATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACCCTCTCCGACTACAAT 94045 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||| ||||||||| |||| || || | |||||||| Sbjct 94046 ATCCAGAAGGAATCCACTCTTCACTTGGTATTGCGTCTCCGAGGAGG 94092 >seq3481 Length=53562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| ||||||| | || || || ||||| ||| || ||| || Sbjct 24049 AAAATGCAGATTTTCGTCAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTGGAGGCC 24108 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | | ||| || ||| ||||| || ||| | || || Sbjct 24109 TCGGACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGTATTCCGCCGGAC 24168 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || || | || ||||| || |||||||| |||||||| | || || |||||||| Sbjct 24169 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGATTAC 24228 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || |||||||||||||||||| ||||| | | || ||||||| Sbjct 24229 AATATCCAGAAGGAATCTACTCTTCACTTGGTGCTCAGGCTAAGAGGAGG 24278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410667625074614