Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq754 271 6e-68 seq3664 95.1 9e-15 seq4530 93.3 3e-14 seq3754 87.8 1e-12 >seq754 Length=177731 Score = 271 bits (300), Expect = 6e-68 Identities = 645/966 (67%), Gaps = 23/966 (2%) Strand=Plus/Plus Query 90991 TAGTCAACGACTCCATCTTCCCACGTGCCCGTAACCGGACCGTTAGCGACACCATCAAAA 91050 ||||||||||||||||| | ||| ||||| | || || || ||||| ||| || Sbjct 50642 TAGTCAACGACTCCATCCTGCCAAGTGCCTTTGACAGGTCCTGTAGCGTTCCCAGTGAAG 50701 Query 91051 TAGTTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCA 91110 ||| | |||| || || || || ||||| || || |||||||| || ||||| Sbjct 50702 GGGTTCTTGCCTTCATAGTCGTGAACTCCAGTCCATCCTCGGCCGTACATAGCAACACCT 50761 Query 91111 ATAATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCAT---TTGCACGGCATGATGC 91167 | | || || | | | ||||||||| | ||||| || ||| || || Sbjct 50762 ACGACAATCTTCTTGGGGTTAACACCTTGA---GCGAGCAGGAATTTCACTCCAAAATCA 50818 Query 91168 GTGGTGTACAACTCGTTCGGGTTCCATTGCGGGGCGTATAGTGTCGTTTGATAGCCCAAA 91227 |||||||| ||| || || |||| || ||||| || | || || | || | Sbjct 50819 GTGGTGTAAGTCTCCTTGGGCATCCACGCAGGAGCGTACAGAGATGTCTGGTGTCCGAG- 50877 Query 91228 TCGGTAT---TTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAA 91284 ||||| | ||||| ||||||||||| ||||| |||| | | || | || Sbjct 50878 --GGTATCATTAGACCAGGCTCCTTTAAAGTCGTAGCTCATCAGGAAGATATGGTCCATG 50935 Query 91285 AACTTTTGTGCAGCGTCATAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGCG 91344 |||| || |||||| || ||||| | || ||||||||| ||||||||| ||| ||| Sbjct 50936 TACTTCTGGGCAGCGCTGTAGTCGACCACTTGGATCTTGTCCCAACCGGCACTGATGGCG 50995 Query 91345 CTTGTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAATCATCCAACATGTCACGCAAC 91404 |||| ||||| ||||| |||| || | |||| | ||||||||| | Sbjct 50996 GAAGTCAGCTCGTATTTCTTACCAGTTTCAGCGGATAGCTCATTGAGCATGTCACGTATT 51055 Query 91405 TCTTTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGATTA 91464 || || | | ||| ||| | |||| | || | |||| | | || || Sbjct 51056 TCCTTCATGAGTTCAACGTAGACATGGCCGTCC---TCAGGGCCTCCAAGGTCAGGGTTG 51112 Query 91465 GCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAAACT 91524 || ||||| || || || || |||||||| ||||| ||||| || || ||||||||| | Sbjct 51113 GCACCTTTGCCTCCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCAAGTT 51172 Query 91525 TGCAAAAATTCTTTAACCGAATCAACGAACACGTT---TCTTCGT-TTGACATCGTGCAT 91580 |||| || ||||| ||||| | ||||| ||| | |||| || ||| ||| | | Sbjct 51173 TGCAGGAAGTCTTTCACCGATGCGACGAA-ACGGTCTCTCTTGGTCTTGTCAT--TTAAG 51229 Query 91581 AAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGCGG 91640 |||| |||| || || | || ||||||||||||||||| || | | ||| | | || Sbjct 51230 AAAA-AGAATGGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGATTTTCAGGTCAGG 51288 Query 91641 GTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAAGC 91700 || || || ||| | ||| || || ||||| |||||||| |||||||||| Sbjct 51289 TTTCGCTTGTTTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAGGTTCGTTCCAAGA 51348 Query 91701 GGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTAAA 91760 || | |||||| || ||||| || | ||||||||| ||||| || || | ||||| || Sbjct 51349 AGACAGACCTTTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGATTGTCACTTTGAA 51408 Query 91761 ATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTGAG 91820 || || || || |||| || ||||||| | || ||||| || || || | Sbjct 51409 GTCCTCTCGGCCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTTCGATCTCCTTCAA 51468 Query 91821 GGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGACAA 91880 ||||| | ||||| ||||||||||| || || |||||||||| ||||| | | Sbjct 51469 ACTGTCGTTAATGCCATCACCTCCGCAAATTGGGATGAAACCGTACAGGAGATGCGTGAG 51528 Query 91881 ATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACAAA 91940 |||||| | || | ||| | |||||| || | ||||||||||||||| || || Sbjct 51529 ATTTGGTACTGGGATACGGTCCACTGGAAACTTTCTGGGGTACACGCCCCATTCGACGAA 51588 Query 91941 GTACGC 91946 ||| || Sbjct 51589 GTAAGC 51594 >seq3664 Length=101255 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || || || ||||||||||| ||||||||||||| | || | |||||| Sbjct 95443 TACCAGATGGAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTC 95384 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | ||| || || ||| |||| ||||| || || || ||| | |||||||||||| Sbjct 95383 AAGTTGCTTTCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTG 95324 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 ||||| |||||| | ||| ||||| | || ||| | |||||| |||| Sbjct 95323 AATTTTAGCCTTGACATTCTCAATGGTGTCTGAAGCTTCTACTTCGAGTGTGATGGTTTT 95264 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| || || ||||| |||||||| Sbjct 95263 ACCTGTCAGGGTCTTCACAAAGATTTGCAT 95234 >seq4530 Length=43051 Score = 93.3 bits (102), Expect = 3e-14 Identities = 167/243 (69%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 18084 TTTTCTTT-TTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG 18142 |||| ||| |||| ||| || | | |||||| || | || || ||||| || ||||| Sbjct 11622 TTTTATTTATTGTATTCCACCTCTCAATCTAAGCACAAGATGTAGAGTTGACTCCTTTTG 11681 Query 18143 AATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCT 18202 |||||||||||| | || ||| | |||||| | ||| ||||| || |||| || | Sbjct 11682 AATGTTGTAGTCTGACAGTGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACG 11741 Query 18203 TTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGT 18262 || || || ||| | ||||||||| || |||| | ||| || | | | || Sbjct 11742 CTGCTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTAACATTCTCGATTGT 11801 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 ||| | ||| || | |||||| | ||||| |||| |||||||||||| || || Sbjct 11802 GTCGGAAGCCTCAACCTCGAGTGTGATGGTCTTGCCAGTCAGTGTTTTTACAAAGATCTG 11861 Query 18323 CAT 18325 ||| Sbjct 11862 CAT 11864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||| ||||| |||||||||||||| | | || | |||| Sbjct 11881 AGCACCAAGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGATAAGGTGCGTCCATCT 11940 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||||||||| || || || || | || || ||||| Sbjct 11941 TCAAGCTGCTTGCCAGCAAAGATAAGTCTCTGCTGGTCTGGAGGAATACCCTCTTTATCT 12000 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || || || | ||| || || || ||| |||| |||||| | Sbjct 12001 TGGATTT-TGGCTTTTACATTCTCAATTGTATCGGAGGCCTCTACCTCAAGAGTGATGGT 12059 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| |||||||||||| || ||||| Sbjct 12060 CTTGCCAGTCAGTGTTTTTACAAAGATCTGCAT 12092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| ||||||||||| |||||||||||||| | | || | |||| Sbjct 12109 AGCACCAAGTGAAGGGTTGATTCTTTCTGAATGTTGTAGTCAGATAGAGTGCGTCCATCT 12168 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| || | |||||||| || || || || | ||||| ||||| Sbjct 12169 TCTAGCTGCTTGCCAGCGAAAATAAGTCTCTGCTGGTCTGGAGGAATACCTTCTTTATCC 12228 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || || || | ||| ||||||| || ||| ||| | || || | Sbjct 12229 TGGATTT-TGGCTTTTACGTTCTCAATAGTGTCAGAGGCCTCAACTTCCAAAGTTATAGT 12287 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| || | ||||| || ||||||||||| Sbjct 12288 TTTGCCAGTTAGAGTTTTAACGAAAATTTGCAT 12320 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || ||||| |||||||||||||| | || ||| | |||||| | ||| Sbjct 13487 TGAAGGGTCGACTCTTTCTGAATGTTGTAGTCTGACAGTGTGCGGCCATCTTCTAGCTGT 13546 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||||||||| || || ||| ||| | ||||||||| || |||| Sbjct 13547 TTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATTTTG 13606 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| || || | || |||| ||||| | ||||| ||| Sbjct 13607 GCCTTTACATTCTCAATGGTATCTGAAGCTTCAACCTCAAGTGTGATTGTCTTGCCAGTC 13666 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||||||| || || ||||| Sbjct 13667 AGTGTTTTTACGAAGATCTGCAT 13689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||| | |||||| || || ||||| |||||||||||||| | || ||| | |||||| Sbjct 13252 TACTAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGTGTGCGGCCATCTTC 13311 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 | ||||| || ||| |||||||||| || || ||| ||| | ||| || || || Sbjct 13312 TAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTG 13371 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| ||| || | ||| ||| || | ||| |||| || ||| |||| Sbjct 13372 GATTTTGGCCTTTACATTCTCAATAGTATCGGAAGCCTCAACCTCAAGAGTAATGGTTTT 13431 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || || || || ||||| Sbjct 13432 ACCGGTCAAGGTCTTAACGAAGATCTGCAT 13461 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || ||||| |||||||||||||| | || ||| | |||| Sbjct 13706 AGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGTGTGCGGCCATCT 13765 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||||||||| || || || ||| | ||| || || || Sbjct 13766 TCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCC 13825 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | ||| ||| || | ||| |||| || ||| || Sbjct 13826 TGGATTTTGGCCTTTACGTTCTCAATAGTATCGGAAGCCTCAACCTCAAGAGTAATGGTT 13885 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || || || || ||||| Sbjct 13886 TTACCGGTCAAGGTCTTAACGAAGATCTGCAT 13917 >seq3754 Length=50117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | | ||||| ||| || || ||||||||||| |||||||| |||| Sbjct 999 TCCACCACGGAGACGCAATACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCGGA 940 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | |||||| || || |||| ||||| || || || ||| Sbjct 939 GAGGGTACGGCCATCTTCAAGTTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCGGGGGG 880 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||||| |||||| | | | ||||| | || Sbjct 879 GATGCCTTCCTTGTCTTGAATTTTAGCCTTGACGTTCTCGATGGTGTCTGAAGCTTCTAC 820 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| || |||| || || ||||| |||||||| Sbjct 819 TTCGAGTGTGATGGTTTTACCTGTCAGGGTCTTCACAAAGATTTGCAT 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379224715397745