Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq754 178 1e-39 seq4530 86.0 5e-12 >seq754 Length=177731 Score = 178 bits (196), Expect = 1e-39 Identities = 631/979 (64%), Gaps = 19/979 (2%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || || |||| ||||||||| || || || | | ||| || || ||| ||||| Sbjct 50627 TTCGCTATCTCTCTGTAGTCAACGACTCCATCCTGCCAAGTGCCTTTGACAGGTCCTGTA 50686 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || ||| |||| || || | | | |||| ||| || || ||||| || |||||| Sbjct 50687 GCGTTCCCAGTGAAGGGGTTCTTGCCTTCATAGTCGTGAACTCCAGTCCATCCTCGGCCG 50746 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || | || || || || || | ||| ||||||| | | Sbjct 50747 TACATAGCAACACCTACGACAATCTTCTTGGGGTTAACACCTTGAGCGAGCAGGAATTTC 50806 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | | | |||||| | || || || ||||||| | | ||||||| | ||| Sbjct 50807 ACTCCAAAATCAGTGGTGTAAGTCTCCTTGGGCATCCACGCAGGAGCGTACAGAGATGTC 50866 Query 36113 TGATGACCGAGATCGGTAT---TAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAA 36169 || || ||||| ||||| ||||||| |||||||| || || || ||||||| ||| Sbjct 50867 TGGTGTCCGAG---GGTATCATTAGACCAGGCTCCTTTAAAGTCGTAGCTCATCAGGAAG 50923 Query 36170 ATTTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCA 36229 || | || | |||| || || | ||| | ||| | ||||||||| || Sbjct 50924 ATATGGTCCATGTACTTCTGGGCAGCGCTGTAGTCGACCACTTGGATCTTGTCCCAACCG 50983 Query 36230 GCGCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGTTTGTATTTGA-ACTTGATCGAG 36288 || || || || | || || || | | | |||| | || | | || ||| Sbjct 50984 GCACTGATGGCGGAAGTCAGCTCGTATTTCTTACCAGTTTC-AGCGGATAGCTCATTGAG 51042 Query 36289 CATGGCGCGCAATTCGCCCAATAAAGCGATATACGT-GTTATTGTCGCGTTCCACATCGC 36347 |||| | || | ||| || | | | |||| | || | || ||| || || Sbjct 51043 CATGTCACGTATTTCCTTCATGA----GTTCAACGTAGACATGGCCG---TCCTCAGGGC 51095 Query 36348 C---AACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGT 36404 | || || || ||||| |||||||| || || || |||||||| ||||| | || | Sbjct 51096 CTCCAAGGTCAGGGTTGGCACCTTTGCCTCCAGGGAACTCCCAATCGATATCAACACCAT 51155 Query 36405 CGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTC 36464 |||| |||||||| || || || || ||| ||| |||| ||| | || | | Sbjct 51156 CGAAGAATTTCCAAGTTTGCAGGAAGTCTTTCACCGATGCGACGAAACGGTCTCTCTTGG 51215 Query 36465 GCGCATCGTGCATATGATAGAAGGGATCGGACAGTGTCCAACCGCCGATTGATGCCAACA 36524 | || | | | |||| ||||| | ||| ||||| || ||||| |||| | | Sbjct 51216 TCTTGTCATTTAAGAAAAAGAATGGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGA 51275 Query 36525 CTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGG 36584 ||| || | || || || ||| ||| | || || |||||||||||||| | Sbjct 51276 TTTTCAGGTCAGGTTTCGCTTGTTTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAG 51335 Query 36585 GTTCGTTCCATGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTA 36644 |||||||||| | | ||| | || ||||| || | || ||||| ||||| || | Sbjct 51336 GTTCGTTCCAAGAAGACAGACCTTTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGA 51395 Query 36645 TGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCG 36704 | | ||||| || | || | ||| ||| || | ||||| |||| ||||| || Sbjct 51396 TTGTCACTTTGAAGTCCTCTCGGCCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTT 51455 Query 36705 TGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTATA 36764 ||| || ||||||||||| || || ||||| |||||||| || || || ||||| | Sbjct 51456 CGATCTCCTTCAAACTGTCGTTAATGCCATCACCTCCGCAAATTGGGATGAAACCGTACA 51515 Query 36765 AAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAACGC 36824 | |||| || || || || | |||||| ||||| || ||| |||| Sbjct 51516 GGAGATGCGTGAGATTTGGTACTGGGATACGGTCCACTGGAAACTTTCTGGGGTACACGC 51575 Query 36825 CCCATTCGACAAAATAGGC 36843 |||||||||| || || || Sbjct 51576 CCCATTCGACGAAGTAAGC 51594 >seq4530 Length=43051 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || ||||| ||||| || ||||| || || || | || || ||| | | Sbjct 12777 ATGCAGATCTTCGTTAAGACCTTGACTGGCAAGACCATCACACTTGAGGTTGAAGCTTCC 12718 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAG-AAGGCGTACCGGTTGACCA 24950 || | | || | |||||| | ||| | | | | ||| ||||| | || ||||| Sbjct 12717 GATACCATTGAGAATGTTAAAGGCCAAAATCCAGGACAAGGAAGGCATCCCCCCAGACCA 12658 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | || || || ||||||||||| || || || |||| Sbjct 12657 GCAGCGTCTTATCTTCGCCGGAAAGCAACTGGAAGACGGACGCACACTGTCGGACTACAA 12598 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||||||||| | || ||||||||||| || || ||||||| ||| Sbjct 12597 CATTCAGAAAGAGTCGACCCTTCATTTAGTATTGCGTCTGCGCGGTGGT 12549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418172464437920