Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq955 304 2e-77
seq4 122 1e-22
seq137 87.8 2e-12
>seq955
Length=106330
Score = 304 bits (336), Expect = 2e-77
Identities = 1141/1771 (64%), Gaps = 40/1771 (2%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104
|||||||| || | | || | || |||||||| | || || ||||| || ||||| |
Sbjct 60339 GTGAATTGGATCGCGTTCGCA-GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAA 60281
Query 62105 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 62164
||| | ||||| ||| ||| || || |||| ||| ||| | || || || |
Sbjct 60280 ACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCAC 60221
Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
||| || || | || || || || || || || || || | || || ||||| | ||
Sbjct 60220 ATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAAT 60161
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62283
| ||||||| || ||| ||||| | || || || || || |||| | |||| ||||
Sbjct 60160 GCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTATT-TCTTTGGGAA 60102
Query 62284 G-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340
| || |||| || | |||||| | || || || || || || ||||
Sbjct 60101 TAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATGATTAGGTTTTTCATATCTTCAT 60042
Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400
||| || | |||||| | | ||| || ||||| |||| || || ||||| || |
Sbjct 60041 CCCACAAGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGC 59982
Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460
| |||| || || || ||| || ||| ||| | || || | ||||| ||||| |
Sbjct 59981 CCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGC 59922
Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520
| | ||||| || || || || || ||||| ||||| | || | |||| ||||
Sbjct 59921 CGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGAC 59862
Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------T 62573
| | | | |||||| ||||| ||| |||| | ||| || || | || |
Sbjct 59861 CATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGT 59802
Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62632
| ||| ||||| | || || | || | | || | || || ||
Sbjct 59801 TCCACATGTCG-------TATTGCAAGATGCCCTGGCTCACCGGAC-AGCCCGGGTAAGT 59750
Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692
||||| || |||||||| || | || || || ||||| ||||| || |||||
Sbjct 59749 TTCATAAACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGTAAAT 59690
Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTG--TGCTTCCGGGCTATCAAATGGATAATTT 62750
|||||| || |||| | ||| | |||| ||| | || ||| | || |
Sbjct 59689 GGTTTCGAAAATCTGTTGATTCAA--CTTGATTGCAGCTTCACTTTCATACGGGATACGC 59632
Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810
| || | || || || || |||||||||||||| || ||||| || | ||| | | |
Sbjct 59631 ATCAGGACGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATG 59572
Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870
|| ||| | | |||||||| || || || | || | ||||| ||||| || |||||
Sbjct 59571 TTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATT- 59513
Query 62871 CTG-ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT 62926
||| || | | ||| || || || || || ||| | | | | |||| |
Sbjct 59512 CTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATT 59453
Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986
|| || |||||| ||| || || |||| |||||||||||| || |||| | ||
Sbjct 59452 GACGAATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGT 59393
Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046
|| | | ||||| ||||| |||||||| || |||||||| || | || | ||||||
Sbjct 59392 GTACTCAACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATT 59333
Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106
|| || |||| || || || || ||||| ||| |||| || || ||||| | || |
Sbjct 59332 GCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGC 59273
Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166
||| || || || ||||| | ||| | || | | | | | || || |||||||
Sbjct 59272 TTCAATGATAGCCTTCCACAAAACTTGCGCTCTCACTT--GCCTCACATATCGTTTCTCT 59215
Query 63167 T--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224
| || ||| | ||| || ||||||||||| ||||| | | ||| | |||
Sbjct 59214 TGTTCATATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGA 59155
Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284
|| || | || ||||| | ||| || |||| || |||| |||||| || |
Sbjct 59154 CAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAG 59095
Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344
|| || ||||| || | ||| || ||||||| | | |||||| || || || ||
Sbjct 59094 TCTGGTATCCAGAGCCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTT 59035
Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404
|| || ||||| | |||| | | ||||| | |||||||| || | ||| | || |
Sbjct 59034 TTCTTGAGATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAG 58975
Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464
| || || |||||||| || || || || | ||| ||||| ||||| ||||| || |
Sbjct 58974 GCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGG 58915
Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524
| ||| || | | ||||| || | || ||||| |||| ||| ||| ||| ||||
Sbjct 58914 AGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCG 58855
Query 63525 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582
|| || | | || ||| | || || || || || ||| ||||| | |||||
Sbjct 58854 CGGATGCAGT-GTACGTGA-ACGCCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAAT 58797
Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63642
|||| | |||||| |||||||| || ||||| || || ||||| | || || |||
Sbjct 58796 GTTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGG 58737
Query 63643 TAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63702
|| | ||| | || | || |||| || | || || |||||||| ||
Sbjct 58736 AGGAGAGCTGGGGGCGGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGT 58677
Query 63703 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63762
| || || || || || |||||||| | ||||| ||||| || ||| ||||| |
Sbjct 58676 ACTTCTCTGACAGCAGGTTGTACGTGTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGC 58617
Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGG 63793
| | | || ||||| | ||||||||| ||
Sbjct 58616 CGATGGAAACTCGCATCAGCATGTGCTGGGG 58586
Score = 102 bits (112), Expect = 1e-16
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074
||||||| || |||||||| | || |||||||| | |||||| ||||||||||| || |
Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833
Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134
||||||| | || || || || ||| | || || |||| | ||||||||||| |
Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773
Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170
| || |||||| |||||| || || |||||||
Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737
>seq4
Length=362500
Score = 122 bits (134), Expect = 1e-22
Identities = 257/383 (67%), Gaps = 3/383 (1%)
Strand=Plus/Minus
Query 155245 ATTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAG 155304
|| ||| ||||||| ||| || || ||||| || ||| | || | || || | | |
Sbjct 26029 ATATCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATG 25970
Query 155305 GCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTA 155364
|| | ||||||| |||| |||||||| ||||| ||||||| ||||||||| | ||
Sbjct 25969 GCAATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTG 25910
Query 155365 CAAGTTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTC 155424
|||||||||||||| | ||||||| || || || | |||||||| |
Sbjct 25909 CAAGTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATG 25850
Query 155425 TCTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCT 155484
| |||||||| | || | || || | | |||| |||| ||| |||| | | |
Sbjct 25849 CCGCATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGAT 25790
Query 155485 ATCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGT---ACCGCTACCGTTT 155541
|| | |||||| |||| || | | || || | ||| | ||| |||||||||
Sbjct 25789 ATGATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTT 25730
Query 155542 GGAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTG 155601
|| | |||||||| ||||| ||| |||| |||| || | | ||| ||| |||
Sbjct 25729 GGTACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTG 25670
Query 155602 TTTGACTGTTTATACTTTGATGG 155624
|||||||| || || | | ||||
Sbjct 25669 TTTGACTGCTTGTATTATAATGG 25647
>seq137
Length=194913
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911
||||||||||| | ||| ||||| || || || | || || || || ||||| |||
Sbjct 27394 TAAGTATCGATGAGCAGAGAGTACATCTCTGAGTGTACATTCTCCATTGCAATCTGGAAT 27453
Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971
|| ||||| ||||| || || || | |||||||||| | | |||| || | || ||
Sbjct 27454 CCATAGAAGCATCTTGCTTCAGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAGTTC 27513
Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024
||||| || || ||||| ||| || || || |||| || ||||| || ||
Sbjct 27514 TCATTGACAATGCCATCGGAGGCCGCGAAGAAAGCCAGGACGTGTTTGATGAA 27566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629614475951280
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