Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq955 304 2e-77 seq4 122 1e-22 seq137 87.8 2e-12 >seq955 Length=106330 Score = 304 bits (336), Expect = 2e-77 Identities = 1141/1771 (64%), Gaps = 40/1771 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 |||||||| || | | || | || |||||||| | || || ||||| || ||||| | Sbjct 60339 GTGAATTGGATCGCGTTCGCA-GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAA 60281 Query 62105 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 62164 ||| | ||||| ||| ||| || || |||| ||| ||| | || || || | Sbjct 60280 ACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCAC 60221 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||| || || | || || || || || || || || || | || || ||||| | || Sbjct 60220 ATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAAT 60161 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62283 | ||||||| || ||| ||||| | || || || || || |||| | |||| |||| Sbjct 60160 GCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTATT-TCTTTGGGAA 60102 Query 62284 G-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCAT 62340 | || |||| || | |||||| | || || || || || || |||| Sbjct 60101 TAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATGATTAGGTTTTTCATATCTTCAT 60042 Query 62341 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTC 62400 ||| || | |||||| | | ||| || ||||| |||| || || ||||| || | Sbjct 60041 CCCACAAGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGC 59982 Query 62401 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62460 | |||| || || || ||| || ||| ||| | || || | ||||| ||||| | Sbjct 59981 CCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGC 59922 Query 62461 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62520 | | ||||| || || || || || ||||| ||||| | || | |||| |||| Sbjct 59921 CGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGAC 59862 Query 62521 CGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------T 62573 | | | | |||||| ||||| ||| |||| | ||| || || | || | Sbjct 59861 CATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGT 59802 Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62632 | ||| ||||| | || || | || | | || | || || || Sbjct 59801 TCCACATGTCG-------TATTGCAAGATGCCCTGGCTCACCGGAC-AGCCCGGGTAAGT 59750 Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692 ||||| || |||||||| || | || || || ||||| ||||| || ||||| Sbjct 59749 TTCATAAACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGTAAAT 59690 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTG--TGCTTCCGGGCTATCAAATGGATAATTT 62750 |||||| || |||| | ||| | |||| ||| | || ||| | || | Sbjct 59689 GGTTTCGAAAATCTGTTGATTCAA--CTTGATTGCAGCTTCACTTTCATACGGGATACGC 59632 Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 | || | || || || || |||||||||||||| || ||||| || | ||| | | | Sbjct 59631 ATCAGGACGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATG 59572 Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 || ||| | | |||||||| || || || | || | ||||| ||||| || ||||| Sbjct 59571 TTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATT- 59513 Query 62871 CTG-ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT 62926 ||| || | | ||| || || || || || ||| | | | | |||| | Sbjct 59512 CTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATT 59453 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 || || |||||| ||| || || |||| |||||||||||| || |||| | || Sbjct 59452 GACGAATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGT 59393 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | | ||||| ||||| |||||||| || |||||||| || | || | |||||| Sbjct 59392 GTACTCAACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATT 59333 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 || || |||| || || || || ||||| ||| |||| || || ||||| | || | Sbjct 59332 GCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGC 59273 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 ||| || || || ||||| | ||| | || | | | | | || || ||||||| Sbjct 59272 TTCAATGATAGCCTTCCACAAAACTTGCGCTCTCACTT--GCCTCACATATCGTTTCTCT 59215 Query 63167 T--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGA 63224 | || ||| | ||| || ||||||||||| ||||| | | ||| | ||| Sbjct 59214 TGTTCATATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGA 59155 Query 63225 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63284 || || | || ||||| | ||| || |||| || |||| |||||| || | Sbjct 59154 CAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAG 59095 Query 63285 TCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 || || ||||| || | ||| || ||||||| | | |||||| || || || || Sbjct 59094 TCTGGTATCCAGAGCCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTT 59035 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || || ||||| | |||| | | ||||| | |||||||| || | ||| | || | Sbjct 59034 TTCTTGAGATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAG 58975 Query 63405 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63464 | || || |||||||| || || || || | ||| ||||| ||||| ||||| || | Sbjct 58974 GCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGG 58915 Query 63465 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 | ||| || | | ||||| || | || ||||| |||| ||| ||| ||| |||| Sbjct 58914 AGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCG 58855 Query 63525 CGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 63582 || || | | || ||| | || || || || || ||| ||||| | ||||| Sbjct 58854 CGGATGCAGT-GTACGTGA-ACGCCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAAT 58797 Query 63583 GTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGC 63642 |||| | |||||| |||||||| || ||||| || || ||||| | || || ||| Sbjct 58796 GTTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGG 58737 Query 63643 TAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 63702 || | ||| | || | || |||| || | || || |||||||| || Sbjct 58736 AGGAGAGCTGGGGGCGGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGT 58677 Query 63703 ATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTC 63762 | || || || || || |||||||| | ||||| ||||| || ||| ||||| | Sbjct 58676 ACTTCTCTGACAGCAGGTTGTACGTGTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGC 58617 Query 63763 CTACTGCGACACGCATTAACATGTGCTGAGG 63793 | | | || ||||| | ||||||||| || Sbjct 58616 CGATGGAAACTCGCATCAGCATGTGCTGGGG 58586 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 64015 GtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAAT 64074 ||||||| || |||||||| | || |||||||| | |||||| ||||||||||| || | Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833 Query 64075 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64134 ||||||| | || || || || ||| | || || |||| | ||||||||||| | Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773 Query 64135 TTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 | || |||||| |||||| || || ||||||| Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737 >seq4 Length=362500 Score = 122 bits (134), Expect = 1e-22 Identities = 257/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 155245 ATTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCATGTGATTCTGTCAATAAG 155304 || ||| ||||||| ||| || || ||||| || ||| | || | || || | | | Sbjct 26029 ATATCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATG 25970 Query 155305 GCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTA 155364 || | ||||||| |||| |||||||| ||||| ||||||| ||||||||| | || Sbjct 25969 GCAATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTG 25910 Query 155365 CAAGTTCATaaaaaaaaTAACGAGTTTGCATTCTTTAGTAGAAACATGAAACCAGTACTC 155424 |||||||||||||| | ||||||| || || || | |||||||| | Sbjct 25909 CAAGTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATG 25850 Query 155425 TCTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCT 155484 | |||||||| | || | || || | | |||| |||| ||| |||| | | | Sbjct 25849 CCGCATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGAT 25790 Query 155485 ATCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGT---ACCGCTACCGTTT 155541 || | |||||| |||| || | | || || | ||| | ||| ||||||||| Sbjct 25789 ATGATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTT 25730 Query 155542 GGAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTG 155601 || | |||||||| ||||| ||| |||| |||| || | | ||| ||| ||| Sbjct 25729 GGTACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTG 25670 Query 155602 TTTGACTGTTTATACTTTGATGG 155624 |||||||| || || | | |||| Sbjct 25669 TTTGACTGCTTGTATTATAATGG 25647 >seq137 Length=194913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 ||||||||||| | ||| ||||| || || || | || || || || ||||| ||| Sbjct 27394 TAAGTATCGATGAGCAGAGAGTACATCTCTGAGTGTACATTCTCCATTGCAATCTGGAAT 27453 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 || ||||| ||||| || || || | |||||||||| | | |||| || | || || Sbjct 27454 CCATAGAAGCATCTTGCTTCAGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAGTTC 27513 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 ||||| || || ||||| ||| || || || |||| || ||||| || || Sbjct 27514 TCATTGACAATGCCATCGGAGGCCGCGAAGAAAGCCAGGACGTGTTTGATGAA 27566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629614475951280