Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq955 192 5e-44 >seq955 Length=106330 Score = 192 bits (212), Expect = 5e-44 Identities = 1027/1614 (64%), Gaps = 50/1614 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| ||||||| || | || | |||| ||| || |||| |||||||| |||||| Sbjct 60345 TCAACAGTGAATTGGATCGCGTTCGCAGCCGGTTTCGTCCTCAGGTAATACATGCCAGTT 60286 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| | ||||| ||| ||| || || || | ||| | || | || | | Sbjct 60285 TTCAAACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCA 60226 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || || | | ||| || || || |||||||| || |||| || |||||||| Sbjct 60225 GCCACATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCAT- 60167 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || | |||| || |||||||| || || || || | || | |||| || | Sbjct 60166 -CTGAATGCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTAT-TTCT 60109 Query 37028 CTGGTAAA----TCTAAATGTTGAATAGAACCATTAT-GTAACACAATTGTATTCTTTAT 37082 ||| || || | || ||| | ||| ||||| | || | | ||| || || || Sbjct 60108 TTGGGAATAGCTTCAATATTTTGGACAGATCCATTGTTGTGA-ATGATTAGGTTTTTCAT 60050 Query 37083 GTCATTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 || | || ||||| | | | || | || |||| || || || | || || |||| Sbjct 60049 ATCTTCATCCCACA-AGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCT 59991 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || || || || | || || | || || || ||| | || || | ||||| Sbjct 59990 GGAACTCGCCCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACT 59931 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 | ||||| | | ||||| | || || || || ||||| ||||||| || || | Sbjct 59930 CGTTATTGCCGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGT 59871 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 ||| | |||||| || ||| | | ||| || || ||| ||||||| ||||| | Sbjct 59870 TTCGGAGACCATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGG 59811 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | || |||||| || ||||| | || || | ||| | ||| | | || | Sbjct 59810 GCGTTTTGTTCCACATGTCGTATTGCAAGATGCCCTGGCTCACCGGACAGCCCGGGTAAG 59751 Query 37382 TCTCATAAGGTCCGTAAATTTT---AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAAT 37438 | |||||| || |||||| ||| || ||||| || | ||||| || |||| | Sbjct 59750 TTTCATAAACGCC---AATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGT 59694 Query 37439 ATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGC-ATAG 37497 | || ||||||||||| ||| ||| || | |||| |||| || || | | ||| Sbjct 59693 AAATGGTTTCGAAAATCTGTTGATTCAACTTGATTGCAGCTTCACTTTCATACGGGATA- 59635 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | || | | || |||| ||||| || ||||||||||| || || || | ||| | Sbjct 59634 CGCATCAGGACGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGC 59575 Query 37558 TTATTAGA--TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTA 37615 | || || ||| | | |||| | || || | || | ||||| ||||| |||| Sbjct 59574 ATGTTTGAGTTCTTGGC--TTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTA 59517 Query 37616 GATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTT----- 37670 |||| | || | ||||| || | | | | | ||| || || || |||||| Sbjct 59516 GATTCTGCACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTA--TACGTTTTGTC 59459 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT- 37729 || ||| || ||| | ||| | | || | | |||||| || ||||||||||| Sbjct 59458 ATCATTGACGAATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGG 59399 Query 37730 ---CGT-TACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAA 37785 ||| |||| || ||||| || ||||||||||| || | || || |||| Sbjct 59398 CGACGTGTACTCAACG-----ATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGG 59344 Query 37786 TTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGT 37845 || |||||||| ||| | || || | ||||| || || || || || || || | Sbjct 59343 TTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTT 59284 Query 37846 TCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTA-At 37904 || | ||| || || || |||| ||||| ||| ||||| | | | || | | || Sbjct 59283 TCGACTTGCGCTTCAATGATAGCCTTCCACAAA--ACTTGCGCTCTCACTTGCCTCACAT 59226 Query 37905 -ttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGC 37963 | ||||| | ||| ||| |||||| || | || || | |||||| ||| Sbjct 59225 ATCGTTTCTCTTGTTCATATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGG 59166 Query 37964 ATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTT 38023 | || ||||| ||| || ||||| || |||||| | | | || || | || Sbjct 59165 CCAGGCCGGGACAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTT 59106 Query 38024 CCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGT 38083 ||| || || || |||| ||| | || ||| | ||| | | | | ||| || | Sbjct 59105 TCATGAACAAGTCTGGTATCCAGAGCCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCT 59046 Query 38084 TCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATA 38142 |||| | | |||||| || | | || || |||||||| |||||||| || || | Sbjct 59045 TCCC-AGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGG 58987 Query 38143 TAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTA 38202 || | || | || || |||| ||| | || || || | | || ||| ||||||| Sbjct 58986 TAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTG 58927 Query 38203 TTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAA 38262 ||||| | | | ||| ||||| | || || || |||||| | |||| || || Sbjct 58926 TTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAG 58867 Query 38263 GTACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATAT 38321 | ||||| || || || | | || || || || || || || ||| || || Sbjct 58866 GATCCCTTGGCGCGGAT-GCAGTGTACGTGAACGCCGATACCGCCCGCTGATTTGGAGAT 58808 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 | ||||| ||||| | ||| || | || || || || ||||| ||||| || Sbjct 58807 GAGCGCGCAATGTTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCAT 58754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468373694895440