Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq955 273 3e-68 seq4 107 3e-18 >seq955 Length=106330 Score = 273 bits (302), Expect = 3e-68 Identities = 1131/1765 (64%), Gaps = 28/1765 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 64897 |||||||| || | | || | || |||||||| | || || ||||| || ||||| | Sbjct 60339 GTGAATTGGATCGCGTTCGCA-GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAA 60281 Query 64898 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 64957 ||| | ||||| ||| ||| || || |||| ||| ||| | || || || | Sbjct 60280 ACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCAC 60221 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||| || || | || || || || || || || || || | || || ||||| | || Sbjct 60220 ATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAAT 60161 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 65076 | ||||||| || ||| ||||| | || || || || || |||| | |||| |||| Sbjct 60160 GCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTATT-TCTTTGGGAA 60102 Query 65077 G-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 65133 | || |||| || | |||||| | || || || || || || |||| Sbjct 60101 TAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATGATTAGGTTTTTCATATCTTCAT 60042 Query 65134 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 65193 ||| || | |||||| | | ||| || ||||| | || || || || || || | Sbjct 60041 CCCACAAGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGC 59982 Query 65194 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 65253 | |||| || || || ||| || ||| ||| | || || | ||||| ||||| | Sbjct 59981 CCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGC 59922 Query 65254 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 65313 | | ||||| || || || || || ||||| ||||| | || | |||| |||| Sbjct 59921 CGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGAC 59862 Query 65314 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 | | | | |||||| ||||| |||| |||| | ||| || || | || Sbjct 59861 CATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGT 59802 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTAT 65432 ||| | || || | || | | || | || || || || || Sbjct 59801 TCCACATGTCGTATTGCAAGATGCCCTGGCTCACCGGAC-AGCCCGGGTAAGTTTCATAA 59743 Query 65433 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 65492 || |||||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 59742 ACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGTAAATGGTTTCG 59683 Query 65493 AAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 65550 || |||| | ||| | |||| ||| | || ||| | || | | || | Sbjct 59682 AAAATCTGTTGATTCAA--CTTGATTGCAGCTTCACTTTCATACGGGATACGCATCAGGA 59625 Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610 || || || || |||||||||||||| || ||||| || | ||| | | | || ||| Sbjct 59624 CGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATGTTTGAGT 59565 Query 65611 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-ACA 65669 | | |||||||| || || || | || | ||||| ||||| || ||||| ||| || Sbjct 59564 TCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATT-CTGCACG 59506 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAAC 65726 | | ||| || || || || || ||| | | | | ||||| | || || Sbjct 59505 ACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATTGACGAAT 59446 Query 65727 ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 65786 |||||| ||| || || |||| |||||| ||||| || |||| | || || | Sbjct 59445 CTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGTGTACTCA 59386 Query 65787 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 65846 | ||||| ||||| |||||||| || ||||| || || | || | |||||| || || Sbjct 59385 ACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATTGCTTTTA 59326 Query 65847 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 65906 |||| || || || || ||||| ||| |||| || || ||||| | || | ||| || Sbjct 59325 CTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGCTTCAATG 59266 Query 65907 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGT 65964 || || ||||| | ||| | || | | | | | || || |||||||| || | Sbjct 59265 ATAGCCTTCCACAAAACTTGCGCTCTCACTT--GCCTCACATATCGTTTCTCTTGTTCAT 59208 Query 65965 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 66024 || | ||| || ||||||||||| ||||| | | ||| || ||||| || | Sbjct 59207 ATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGACAGTCGT 59148 Query 66025 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 66084 || ||||| | ||| || |||| || |||| |||||| || | || || | Sbjct 59147 GGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAGTCTGGTA 59088 Query 66085 TCCAAAGAGCTATAAATAA-ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 66143 |||| || | ||||| || ||||| | | | |||||| || || || || || || Sbjct 59087 TCCAGAG-CCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTTTTCTTG 59029 Query 66144 AGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 66203 ||||| | |||| | | ||||| |||||||| || | ||| | || | | || Sbjct 59028 AGATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAGGCGCCG 58969 Query 66204 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 66263 || |||||||| || || || || | ||| ||||| ||||| ||||| || | | ||| Sbjct 58968 GGTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGGAGCATG 58909 Query 66264 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT- 66322 || | | || ||||| || ||||| |||| ||| ||| ||| | || || || Sbjct 58908 GGTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCGCGGATG 58849 Query 66323 -ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 | | || ||| | || || || || || ||| ||||| | ||||| |||| | Sbjct 58848 CAGT-GTACGTGA-ACGCCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGA 58791 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 66441 ||| || ||||||||||| || || || ||| ||||| | || || ||| || | Sbjct 58790 GCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGA 58731 Query 66442 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 66501 ||| | || || |||| || | || || |||||||| || | || | Sbjct 58730 GCTGGGGGCGGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGTACTTCT 58671 Query 66502 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 66561 | || || || |||||||| | ||||| ||||| || ||| ||||| || | | Sbjct 58670 CTGACAGCAGGTTGTACGTGTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGCCGATGG 58611 Query 66562 CGACACGCATTAACATGTGCTGAGG 66586 || ||||| | ||||||||| || Sbjct 58610 AAACTCGCATCAGCATGTGCTGGGG 58586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 66808 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAAT 66867 ||||||| || || ||||| | || |||| ||| | ||| || |||| |||||| || | Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833 Query 66868 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 66927 ||||||| | || || || || ||| | || || |||| | ||||||||||| | Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773 Query 66928 TTGTTACTCCATTATATATTCCTTGGATAACCTTCA 66963 | || |||||| |||||| || ||| ||||||| Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737 >seq4 Length=362500 Score = 107 bits (118), Expect = 3e-18 Identities = 252/380 (66%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 158439 TCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCA 158498 ||| ||||||| ||| || || ||||| || ||| | || | || || | | |||| Sbjct 26026 TCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATGGCA 25967 Query 158499 TTTAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAA 158558 | ||||||| |||| |||||||| | ||| ||||||| ||||| || | || ||| Sbjct 25966 ATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTGCAA 25907 Query 158559 GTTCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCT 158618 ||||||||||| | ||||||| | || || | |||||||| | | Sbjct 25906 GTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATGCCG 25847 Query 158619 CATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATC 158678 |||||||| | || | || || | | |||| |||| ||| |||| | | ||| Sbjct 25846 CATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGATATG 25787 Query 158679 GTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTTGGA 158735 | |||||| |||| || | | || || | ||| | ||| || |||||||| Sbjct 25786 ATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTTGGT 25727 Query 158736 AGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTT 158795 | |||||||| ||||| ||| |||| |||| || | | ||| ||| |||||| Sbjct 25726 ACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTGTTT 25667 Query 158796 GACTGTTTGTACTTTGATGG 158815 ||||| ||||| | | |||| Sbjct 25666 GACTGCTTGTATTATAATGG 25647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657960531044840