Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq754 233 2e-56 seq955 138 1e-27 seq4530 118 1e-21 seq3481 96.9 3e-15 seq3664 89.7 5e-13 seq3754 86.0 6e-12 >seq754 Length=177731 Score = 233 bits (258), Expect = 2e-56 Identities = 353/495 (71%), Gaps = 8/495 (2%) Strand=Plus/Plus Query 20806 GGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCAAAGAATTTC 20865 ||||| || || ||||| || || ||||||||||| || || || ||||| ||||||||| Sbjct 51107 GGGTTGGCACCTTTGCCTCCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 51166 Query 20866 CACGTTTCTAGATACTCTTGGACCGAATCGAT-AAACGTTTGGCGCACGATCTTGTCGTG 20924 || |||| || | |||| ||||| ||| ||||| | | | | ||||||| | Sbjct 51167 CAAGTTTGCAGGAAGTCTTTCACCGATGCGACGAAACGGTCT-CTCTTGGTCTTGTCATT 51225 Query 20925 CATATGGAAAA--ATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACACTTTGAGA 20982 || | |||| |||| || | || |||||||| ||||| || || | | ||| || Sbjct 51226 --TAAGAAAAAGAATGGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGATTTTCAGG 51283 Query 20983 TGCGGGTTCGCCAATTTCGCGGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTC 21042 | || ||||| |||| ||| || ||||| || ||||||||||| ||||||||| Sbjct 51284 TCAGGTTTCGCTTGTTTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAGGTTCGTTC 51343 Query 21043 CATGCGCTGACACCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGTGAATGGCCACC 21102 || | | |||||||||||||||||| | ||| ||||| ||||| || || | ||| Sbjct 51344 CAAGAAGACAGACCTTTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGATTGTCACT 51403 Query 21103 TTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGCCCGGGA-CACT 21161 || ||||| | ||||| ||| |||||||||| |||| ||||||||| || | | Sbjct 51404 TTGAAGTCCTCTCGGCCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTTCGATCTCC 51463 Query 21162 TTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCGTACAACAAATG 21221 || | | ||||| ||||| || |||||||| || || | ||||||||||| | ||| Sbjct 51464 TTCAAAC-TGTCGTTAATGCCATCACCTCCGCAAATTGGGATGAAACCGTACAGGAGATG 51522 Query 21222 CGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATACACACCCCATTC 21281 || | || ||| || | || || ||||||| | || ||||| |||||||| Sbjct 51523 CGTGAGATTTGGTACTGGGATACGGTCCACTGGAAACTTTCTGGGGTACACGCCCCATTC 51582 Query 21282 GACAAAGTATGCTCC 21296 ||| ||||| ||||| Sbjct 51583 GACGAAGTAAGCTCC 51597 >seq955 Length=106330 Score = 138 bits (152), Expect = 1e-27 Identities = 287/427 (67%), Gaps = 3/427 (1%) Strand=Plus/Minus Query 153384 GTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAAC 153443 |||||| ||||||||| |||| | ||||| || || | ||||| || |||| | Sbjct 59688 GTTTCGAAAATCTGTTGATTCAACTTGATTGCAGCTTCACTTTCATACGGGATACGCATC 59629 Query 153444 ATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTA 153503 | ||| || ||||||||||| ||||||| || || || || || ||||| ||||| || Sbjct 59628 AGGACGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATGTTT 59569 Query 153504 GAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATC 153563 || || || || || | || ||||| || || || ||||| |||| | | | Sbjct 59568 GAGTTCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATTCTGC 59509 Query 153564 ACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTC---CATTAATGATA 153620 ||||| ||| || | | | | ||| | | ||||| ||| | ||| Sbjct 59508 ACGACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATTGACG 59449 Query 153621 TATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATAT 153680 || |||| | || | |||||||| || || |||||| ||| || || | || Sbjct 59448 AATCTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGTGTAC 59389 Query 153681 TGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTT 153740 | || || |||| || | ||| |||||||| || ||| || ||||||||||| Sbjct 59388 TCAACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATTGCTT 59329 Query 153741 TTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCT 153800 || | ||| || ||||| ||||| ||||||||||| || ||||||||| |||| ||| Sbjct 59328 TTACTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGCTTCA 59269 Query 153801 ATAATAG 153807 || |||| Sbjct 59268 ATGATAG 59262 >seq4530 Length=43051 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| ||||| |||| || |||||||| |||||||| || || | Sbjct 13463 CCACCGCGCAGACGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCTGAC 13522 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| |||||||| || ||| |||| || | ||||| || || || Sbjct 13523 AGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGA 13582 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| |||||| |||| | || | || || | | || ||| Sbjct 13583 ATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTATCTGAAGCTTCAACC 13642 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||||| |||| ||||||||||| || |||||| Sbjct 13643 TCAAGTGTGATTGTCTTGCCAGTCAGTGTTTTTACGAAGATCTGCATA 13690 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| || || || ||||| ||||| || || || ||| Sbjct 11668 GTTGACTCCTTTTGAATGTTGTAGTCTGACAGTGTGCGGCCATCTTCAAGTTGCTTGCCA 11727 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| ||||| || |||||||| ||||| ||||||| || Sbjct 11728 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTA 11787 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | ||| ||||| | || | |||||||| |||| ||| Sbjct 11788 ACATTCTCGATTGTGTCGGAAGCCTCAACCTCGAGTGTGATGGTCTTGCCAGTCAGTGTT 11847 Query 139748 TTTACGAATATTTGCATA 139765 ||||| || || |||||| Sbjct 11848 TTTACAAAGATCTGCATA 11865 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | |||||||| || || ||||| || || | Sbjct 12779 CCACCACGCAGACGCAGTACCAAGTGTAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAC 12838 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| |||||||| || ||| |||| || | ||||| || || || Sbjct 12839 AGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGA 12898 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| |||| | || | || |||| | || ||| Sbjct 12899 ATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTATCGGAAGCTTCAACC 12958 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | || || || ||||| || |||||||| || |||||| Sbjct 12959 TCAAGAGTAATGGTTTTACCAGTCAAAGTCTTTACGAAGATCTGCATA 13006 >seq3481 Length=53562 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||||| || || || || || |||||| || |||| ||||| Sbjct 24260 ACCAAGTGAAGAGTAGATTCCTTCTGGATATTGTAATCGGACAGGGTGCGGCCATCTTCC 24201 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| || || |||| ||||| ||||| || || || || || || || || || Sbjct 24200 AGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGAATACCCTCCTTATCC-TG 24142 Query 139676 ATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 | | || | || | |||| || || |||| | || ||||||||||| ||| | |||| Sbjct 24141 AATCTTGGCCTTCAC-GTTCTCAATGGTGTCCGAGGCCTCCACCTCAAGGGTGATGGTCT 24083 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| | ||||| ||||| || ||||| Sbjct 24082 TCCCGGTTAGGGTTTTGACGAAAATCTGCAT 24052 >seq3664 Length=101255 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || ||||||| || || || ||||||||||||||||| Sbjct 95232 CCACCTCGGAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGAATGTTATAATCAGAA 95173 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || || || |||||| |||||| ||| || || || || || Sbjct 95172 AGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 95113 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| || || || | | ||| | || || | | ||| || Sbjct 95112 ATGCCCTCCTTGTCTTGTATCTTAGCCTTCACATTTTCAATGGTATCTGAAGCCTCGACT 95053 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || | || || ||||| |||||||| Sbjct 95052 TCAAGAGTTATAGTTTTGCCAGTAAGGGTCTTGACGAAAATTTGCAT 95006 >seq3754 Length=50117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || ||||||| || || || ||||||||||||||||| Sbjct 770 CCACCTCGGAGACGCAATACCAAGTGAAGGGTGGATTCCTTTTGAATGTTATAATCAGAA 711 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| || || || || ||| |||||| ||| || || || || || Sbjct 710 AGGGTGCGGCCATCTTCAAGTTGCTTCCCGGCAAAGATCAAACGCTGTTGGTCTGGGGGA 651 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| || || || | | ||| | || || | | ||| || Sbjct 650 ATGCCCTCCTTGTCTTGTATCTTAGCCTTCACATTTTCAATGGTATCTGAAGCCTCGACT 591 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || | || || ||||| |||||||| Sbjct 590 TCAAGAGTTATAGTTTTGCCAGTAAGGGTCTTGACGAAAATTTGCAT 544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495904013159200