Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3754 96.9 3e-15 seq3664 96.9 3e-15 seq3481 95.1 9e-15 >seq3754 Length=50117 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || ||||| || | |||| ||||| || | ||||||||| || Sbjct 1454 CCTCCTCGGAGACGCAATACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAATCAGAA 1395 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || || |||||||| ||||| |||||||| || | || Sbjct 1394 AGGGTGCGACCGTCTTCTAGCTGCTTCCCGGCAAAGATCAAACGCTGTTGGTCTGGGGGA 1335 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| || || ||||||||| Sbjct 1334 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTTTCAATGGTATCTGAAGCCTCGACT 1275 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||||||||| || || || || || || |||||||||||| Sbjct 1274 TCAAGAGTTATAGTTTTGCCAGTAAGGGTCTTGACGAAAATTTGCATT 1227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | |||| || || || | ||||||||| || | ||||| | || Sbjct 299 AATACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAAAGGGTACGGCCATCT 240 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || || || |||||||||||||| || | || | |||||||| || Sbjct 239 TCAAGTTGTTTTCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 180 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | || || | ||| ||||| ||| || || || | || || || Sbjct 179 TGGATCTTGGCCTTCACATTTTCAATAGTGTCCGAAGCTTCAACTTCAAGAGTGATTGTC 120 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || || || || ||||||||||||||| Sbjct 119 TTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 87 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | |||| || || || | ||||||||| || | ||||| | || Sbjct 1211 AATACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAAAGGGTACGGCCATCT 1152 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || || || |||||||||||||| || | || | |||||||| || Sbjct 1151 TCAAGTTGTTTTCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 1092 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | || || | ||| ||||| ||| || || || | || || || Sbjct 1091 TGGATCTTGGCCTTCACATTTTCAATAGTGTCCGAAGCTTCAACTTCAAGAGTGATTGTC 1032 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || || || || ||||||||||||||| Sbjct 1031 TTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 999 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | |||| || || || | ||||||||| || | ||||| | || Sbjct 527 AATACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAAAGGGTACGGCCATCT 468 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || || || |||||||||||||| || | || | |||||||| || Sbjct 467 TCAAGTTGTTTTCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 408 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | || || | ||| ||||| ||| || || || | || || ||| Sbjct 407 TGGATCTTGGCCTTCACATTTTCAATGGTGTCCGAAGCTTCTACTTCAAGTGTGATGGTT 348 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || |||||||| || ||||| Sbjct 347 TTACCTGTGAGGGTCTTCACAAAGATCTGCAT 316 >seq3664 Length=101255 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | || ||||| || | |||| ||||| || | ||||||||| || Sbjct 95916 CCTCCTCGGAGACGCAATACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAATCAGAA 95857 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || || |||||||| ||||| |||||||| || | || Sbjct 95856 AGGGTGCGACCGTCTTCTAGCTGCTTCCCGGCAAAGATCAAACGCTGTTGGTCTGGGGGA 95797 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| || || ||||||||| Sbjct 95796 ATGCCCTCCTTGTCTTGGATCTTAGCCTTCACATTTTCAATGGTATCTGAAGCCTCGACT 95737 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||||||||||| || || || || || || |||||||||||| Sbjct 95736 TCAAGAGTTATAGTTTTGCCAGTAAGGGTCTTGACGAAAATTTGCATT 95689 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | |||| || || || | ||||||||| || | ||||| | || Sbjct 94761 AATACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAAAGGGTACGGCCATCT 94702 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || || || |||||||||||||| || | || | |||||||| || Sbjct 94701 TCAAGTTGTTTTCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 94642 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | || || | ||| ||||| ||| || || || | || || || Sbjct 94641 TGGATCTTGGCCTTCACATTTTCAATAGTGTCCGAAGCTTCAACTTCAAGAGTGATTGTC 94582 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || || || || |||||||| |||||| Sbjct 94581 TTTCCAGTAAGGGTCTTGACAAAAATCTGCATT 94549 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | |||| || || || | ||||||||| || | ||||| | || Sbjct 94989 AATACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAAAGGGTACGGCCATCT 94930 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | |||||| || || || |||||||||||||| || | || | |||||||| || Sbjct 94929 TCAAGTTGTTTTCCAGCGAAGATCAATCGCTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 94870 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | || || | ||| ||||| ||| || || || | || || ||| Sbjct 94869 TGGATCTTGGCCTTCACATTTTCAATGGTGTCCGAAGCTTCTACTTCAAGTGTGATGGTT 94810 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || |||||||| || ||||| Sbjct 94809 TTACCTGTGAGGGTCTTCACAAAGATCTGCAT 94778 >seq3481 Length=53562 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | |||||| || | ||| ||||| || | ||||||||||||| Sbjct 24278 CCTCCTCTTAGCCTGAGCACCAAGTGAAGAGTAGATTCCTTCTGGATATTGTAATCGGAC 24219 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||||||||| || || | ||||| || || | ||| Sbjct 24218 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGA 24159 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || ||| ||| | || || | ||| ||||| ||||| || Sbjct 24158 ATACCCTCCTTATC-CTGAATCTTGGCCTTCACGTTCTCAATGGTGTCCGAGGCCTCCAC 24100 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || |||||||| ||||| || ||||| |||||||| Sbjct 24099 CTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAAATCTGCATTTT 24049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381249678448458