Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq955 273 3e-68 seq4 116 5e-21 >seq955 Length=106330 Score = 273 bits (302), Expect = 3e-68 Identities = 1083/1692 (64%), Gaps = 22/1692 (1%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 |||||| | || || |||||||| ||||| | ||| | ||||| ||| ||| || || Sbjct 60313 TTTCGTCCTCAGGTAATACATGCCAGTTTTCAAACCCATTTTCCATGCGTGAAAGTGAAT 60254 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||| ||| |||| | || || || | ||||| || | ||||| || || || Sbjct 60253 TGATGTTAATTTACCATAGTTGGGTTCAGCCACATGAATGTTGAATGACTGGCTCTGGTC 60194 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || || || || | || || ||||| | ||| ||||||| || ||| ||||| | Sbjct 60193 TATAAAAGCCCCTCGATCAGCTGCCATCTGAATGCTCGTCTTGACTGAAATCTCCCAGAC 60134 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCAC 71062 || || || || || |||| | |||| |||| | || |||| || | |||||| Sbjct 60133 TGTCTTGTACAATTCTCTTATT-TCTTTGGGAATAGCTTCAATATTTTGGACAGATCCAT 60075 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122 | ||| || ||||| || ||||||| ||| || | |||||| | | ||| Sbjct 60074 TGTTGTGAATGATTAGGTTTTTCATATCTTCATCCCACAAGTCCGCCTCGGTCAGATCTC 60015 Query 71123 TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 71182 || |||||| | || || || || || || || |||| || || || ||| || | Sbjct 60014 GCAGCAGATGATGGTTCACGACCTGGAACTCGCCCGACAGGACCCTGCGCTGGTAGATGT 59955 Query 71183 TACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 71242 || ||| | || || | ||||| ||||| || | ||||| || || || || || | Sbjct 59954 TAGACGTAAAAGGCTCGAAGGACTCGTTATTGCCGAGGATTTGTGCGGTGGAGGCGGTGG 59895 Query 71243 GCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAG 71302 |||| ||||| | || || |||| ||||||||| |||||| ||||| |||| Sbjct 59894 GCATCGGTGCTAATAAGAGCGAGTTTCGGAGACCATGTTTAGCGATTTTTTCTTTGAGAG 59835 Query 71303 ATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGT 71362 |||| | ||| || || | || ||||| | Sbjct 59834 CACCCCAGTCCCATAGGTCTGTGGGCGTTTTGTTCCACATGTCGTATTGCAAGATGCCCT 59775 Query 71363 TACT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAA 71421 || | || | | || | || || || || || ||| || || || || || Sbjct 59774 GGCTCACCGGAC-AGCCCGGGTAAGTTTCATAAACGCCAATTTTCTCAGCGAGCTCGCAG 59716 Query 71422 CTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG--TG 71479 || || ||||| || ||||| ||||||||||||||||||| | ||| | |||| || Sbjct 59715 CTTGCTTCTAACGCACCATAGTAAATGGTTTCGAAAATCTGTTGATTCAA--CTTGATTG 59658 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539 | | || ||| | || | | || | || || || || ||||||||||| | Sbjct 59657 CAGCTTCACTTTCATACGGGATACGCATCAGGACGAAAGCATCGGCCAATCCTTGAACAC 59598 Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599 | || ||||| || | || | | | || || | | |||||||| || || || | | Sbjct 59597 CGATTCCGATCGGCCGATGCCGCATGTTTGAGTTCTTGGCTTCTGGGATCGGGTAGAAGT 59538 Query 71600 TAATATCTATAATTTTATTGAGATTTCTG-ACTATTACTTTGACCACATCCTTTAGTTTG 71658 | | ||||| ||||| || ||| ||||| || | | ||| || || ||||| || Sbjct 59537 TCACCTCTATGATTTTGTTTAGA-TTCTGCACGACGATTTTAGTGACTTCTTTTAGCTTC 59479 Query 71659 AGAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTA 71715 ||| | | | | | |||| | || || ||||| || || || |||| |||| Sbjct 59478 TCAAAGTTATACGTTTTGTCATCATTGACGAATCTGTTCAGTGCGACGGACGCCAAATTA 59419 Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 || ||||| || |||| | | || | | || || ||||| |||||||| || Sbjct 59418 CACACGGCAACTTCATCCGGCGACGTGTACTCAACGATCTCCGTGCAGAGATTACTGCAT 59359 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 ||||| || || | || | |||||| || || |||| || || || || ||||| || Sbjct 59358 TTGATAGTGCCCAGGTTCTTTTGATTGCTTTTACTGTTGCATGCGTCTTTGTAAAGCATG 59299 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 | || || || ||||| | || | ||| || || || ||||| | ||| | || | Sbjct 59298 TATGGGGTCCCGGTTTCGACTTGCGCTTCAATGATAGCCTTCCACAAAACTTGCGCTCTC 59239 Query 71896 ATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCT 71955 | | || |||| || ||| ||| ||| | |||||| ||||||||||| Sbjct 59238 ACTTGCCTCACATATCGTTTCTCTTGTTCATATCGCTCATATAACTTCTCGAACTCGTC- 59180 Query 71956 CCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||| |||| | | | | || ||||| || | || ||||| | ||| || || | Sbjct 59179 CCCCCAGCAGTCGGCCAGGCCGGGACAGTCGTGGGGGCACATGAGGCTCCATTCGCCGTT 59120 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | |||| |||||| || | || || ||||| || | ||| || ||||| | Sbjct 59119 GCTCTCGACTCTTTTCATGAACAAGTCTGGTATCCAGAGCCCATAAAAAAGCTCTCTTGC 59060 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | | ||||| || || || || || || ||||| | |||| | | ||||| | || Sbjct 59059 GCGAACTTCCTCCTTCCCAGTGTTTTTCTTGAGATCCAAGAACTCAAATATATCCGCGTG 59000 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 |||||| || | ||| | || | | || || |||||||| || || || || | ||| Sbjct 58999 CCACGGCTCGAGGTAGACCGCGAAGGCGCCGGGTCGTTTGTTCCCGCCTTGGTCGACGTA 58940 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGT 72254 ||||| ||||| ||||| || | | ||| || | | || ||||| | || ||||| Sbjct 58939 CCTAGCTGTGTTGTTATAGACGCGGAGCATGGGTACGAGGCCGTTGGAGACGCCGTTGGT 58880 Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCT 72312 |||| ||| ||| ||| |||| || || | || || ||| | || || || || Sbjct 58879 TCCGGCGATGTAGGATCCCTTGGCGCGGATGCAGTG-TACGTGA-ACGCCGATACCGCCC 58822 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 || ||| ||||| | ||||| |||| | ||| || ||||||||||| || || || Sbjct 58821 GCTGATTTGGAGATGAGCGCGCAATGTTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCG 58762 Query 72373 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 ||| ||||| | || || ||| || | ||| | || || |||| || Sbjct 58761 TCCTTCATGGCGATGAGGAAGCAGGAGGAGAGCTGGGGGCGGGGCGTGGCCGCCGAGAAC 58702 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492 | || || |||||||| || | || || ||||| || |||||||| | ||||| Sbjct 58701 AGCGTGGGGCTCGCGTGCGTGAAGTACTTCTCTGACAGCAGGTTGTACGTGTTGATAGCG 58642 Query 72493 GATTCTATATCC 72504 || || || ||| Sbjct 58641 GAGTCGATGTCC 58630 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 72770 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 72829 ||||||| || |||||||| | || |||| ||| | |||||| ||||||||||| || | Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833 Query 72830 CTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCG 72889 | ||||| | || || || || ||| | || || |||| | ||||||||||| | Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773 Query 72890 TTGTTACTCCATTATATATTCCTTGGATAACCTTCA 72925 | || |||||| |||||| || ||| ||||||| Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737 >seq4 Length=362500 Score = 116 bits (128), Expect = 5e-21 Identities = 256/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 165033 ATTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAG 165092 || ||| ||||||| ||| || || ||||| || ||| | || | || || | | | Sbjct 26029 ATATCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATG 25970 Query 165093 GCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTA 165152 || | ||||||| |||| |||||||| ||||| ||||||| ||||||||| | || Sbjct 25969 GCAATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTG 25910 Query 165153 CAAGTTCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTC 165212 |||||||||||||| | ||||||| | || || | |||||||| | Sbjct 25909 CAAGTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATG 25850 Query 165213 TCTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCT 165272 | |||||||| | || | || || | | |||| |||| ||| |||| | | | Sbjct 25849 CCGCATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGAT 25790 Query 165273 ATCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGT---ACCGCTACCGTTT 165329 || | |||||| |||| || | | || || | ||| | ||| ||||||||| Sbjct 25789 ATGATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTT 25730 Query 165330 GGAAGTTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTG 165389 || | |||||||| ||||| ||| |||| |||| || | | ||| ||| ||| Sbjct 25729 GGTACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTG 25670 Query 165390 TTTGACTGTTTGCACTTTGATGG 165412 |||||||| ||| | | | |||| Sbjct 25669 TTTGACTGCTTGTATTATAATGG 25647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670922749218760