Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq754 289 2e-73 seq4530 107 2e-18 seq7468 91.5 1e-13 seq3481 91.5 1e-13 >seq754 Length=177731 Score = 289 bits (320), Expect = 2e-73 Identities = 656/970 (68%), Gaps = 31/970 (3%) Strand=Plus/Plus Query 100328 TAATCGACAACGCCGTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAA 100387 || || || || || || | ||||||||| | || || || | ||| | || ||||| Sbjct 50642 TAGTCAACGACTCCATCCTGCCAAGTGCCTTTGACAGGTCCTGTAGCGTTCCCAGTGAAG 50701 Query 100388 TAGTTGTCACCGTCATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCC 100447 ||| | || |||||| | || || ||||| || ||||||||||| ||||| || Sbjct 50702 GGGTTCTTGCCTTCATAGTCGTGAACTCCAGTCCATCCTCGGCCGTACATAGCAACACCT 50761 Query 100448 ACAATAATTTTGCGCGGGTCCACGCCCTGGTTCGTG-AGCAATTTCACGGCGTGATCCGT 100506 || | ||| || |||| || || || || | || |||||||| | ||| || Sbjct 50762 ACGACAATCTTCTTGGGGTTAACACCTTGAG-CGAGCAGGAATTTCACTCCAAAATCAGT 50820 Query 100507 GTTGTACAGCTCGTTCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATC 100566 | |||| ||| || || |||| || ||||| |||| || |||| || | Sbjct 50821 GGTGTAAGTCTCCTTGGGCATCCACGCAGGAGCGTACAGAGATGTCTGGTGTCCGAG--- 50877 Query 100567 GGTGT---TTGACCAGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGAGAAG 100623 ||| | | |||||||| |||||||| ||||||||||| || || || | || | Sbjct 50878 GGTATCATTAGACCAGGCTCCTTTAAAGTCGTAGCTCATCAGGAAGATATGGTCCATGTA 50937 Query 100624 CTTTTGCGCAACGTCGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCT 100683 ||| || ||| || ||| | ||||| || ||||| | |||| |||||| ||| Sbjct 50938 CTTCTGGGCAGCGCTGTAGTCGACCACTTGGATCTTGTCCCAACCGGCACTGATGGCGGA 50997 Query 100684 TGTCAACTCGTACGTTTTGCCCGTTTGCAGTTG-TAGCTGGTCCAGCATCGCGCGCAATT 100742 |||| |||||| | || || |||| ||| | ||||| | ||||| | || | || Sbjct 50998 AGTCAGCTCGTATTTCTTACCAGTTT-CAGCGGATAGCTCATTGAGCATGTCACGTATTT 51056 Query 100743 CCTTCA---GTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTC-GGG 100798 |||||| || || || | || || | |||| ||| | ||||| ||| ||| Sbjct 51057 CCTTCATGAGTTCAACGTAG-ACATGGC--CGTC---CTCAGGGCCTCCAAG-GTCAGGG 51109 Query 100799 TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCAC 100858 ||||| |||||||| || || |||||||| || || || || || || || || ||||| Sbjct 51110 TTGGCACCTTTGCCTCCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCAA 51169 Query 100859 ACCTGCAAAAATTCCTTGACCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTG-CAT 100917 |||| || || || ||||| | || || ||| || | || || || ||| Sbjct 51170 GTTTGCAGGAAGTCTTTCACCGATGCGACGAA-ACG----GTCTCTCTTGGTCTTGTCAT 51224 Query 100918 ----GAAATAGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGT 100973 |||| |||| || || | || |||||||| |||||||| || || ||||| |||| Sbjct 51225 TTAAGAAAAAGAATGGATCAGCCAGGGTCCAGCCACCGATGGATGGGAGGATTTTCAGGT 51284 Query 100974 GCGGATTGGCCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCC 101033 || || || | || | ||| ||||| ||||||||||| ||||| || ||||||| Sbjct 51285 CAGGTTTCGCTTGTTTCAACATCATGAGCTGGCCGAAATTGCCTTTGTAAGGTTCGTTCC 51344 Query 101034 ATGCGGACACGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTT 101093 | | |||| || || || ||||| || | || ||||| ||||| || || | |||| Sbjct 51345 AAGAAGACAGACCTTTCTGGGGTTTCTGCAAGGCTGCCCATGGATCATGGATTGTCACTT 51404 Query 101094 TGAAATCTGAACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTT 101153 |||| || || || ||||||| || ||||| |||| |||||||| || | Sbjct 51405 TGAAGTCCTCTCGGCCGCTGCAGGAACGTTGCAGAGCTTGGAAACTGCCTTCGATCTCCT 51464 Query 101154 TGAGGGCGTCGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCG 101213 | | |||||| | ||| || || |||||||| || ||||| ||||||| ||||||| Sbjct 51465 TCAAACTGTCGTTAATGCCATCACCTCCGCAAATTGGGATGAAACCGTACAGGAGATGCG 51524 Query 101214 AGAGATTGGGCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTA 101273 |||||| || | || | ||| || ||||| || | | |||||||||||| || | Sbjct 51525 TGAGATTTGGTACTGGGATACGGTCCACTGGAAACTTTCTGGGGTACACGCCCCATTCGA 51584 Query 101274 CAAAATACGC 101283 | || || || Sbjct 51585 CGAAGTAAGC 51594 >seq4530 Length=43051 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| | || ||||| ||| | || ||||| || ||||| ||||| || | | Sbjct 13691 CCACCGCGCAGACGTAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 13750 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || |||||||| || ||| | |||||||||||||| || ||| Sbjct 13751 AGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGA 13810 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||||||||| ||||| ||||| | | | ||||||| || ||| Sbjct 13811 ATGCCCTCTTTGTCCTGGATTTTGGCCTTTACGTTCTCAATAGTATCGGAAGCCTCAACC 13870 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||||||||| || || || || || || || ||||| Sbjct 13871 TCAAGAGTAATGGTTTTACCGGTCAAGGTCTTAACGAAGATCTGCAT 13917 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||| || ||||| ||||| || | || ||| | | || || |||||||| || Sbjct 13265 GTGGACTCTTTCTGAATGTTGTAGTCTGACAGTGTGCGGCCATCTTCTAGCTGTTTTCCG 13324 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | |||||||||||||| ||| ||| | |||||||||||| ||||| ||| Sbjct 13325 GCAAAGATAAGTCTCTGCTGGTCCGGGGGAATGCCCTCTTTGTCCTGGATTTTGGCCTTT 13384 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||||| || ||| || | |||||||||||||| || || || Sbjct 13385 ACATTCTCAATAGTATCGGAAGCCTCAACCTCAAGAGTAATGGTTTTACCGGTCAAGGTC 13444 Query 19025 TTGACAAAAATTTGCAT 19041 || || || || ||||| Sbjct 13445 TTAACGAAGATCTGCAT 13461 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || | || ||| | | || || Sbjct 12797 ACCAAGTGTAGAGTAGACTCCTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCT 12856 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | |||||||||||||| ||| ||| | ||| |||||||| Sbjct 12857 AGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGGAATGCCTTCTTTGTCCTGG 12916 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||||| | | | |||||| || || || | |||||||||||| Sbjct 12917 ATTTTGGCCTTTACATTCTCAATGGTATCGGAAGCTTCAACCTCAAGAGTAATGGTTTTA 12976 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || || || || ||||| Sbjct 12977 CCAGTCAAAGTCTTTACGAAGATCTGCAT 13005 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| ||||| || || ||||| || | || ||| | | || || Sbjct 13937 ACCAAGTGTAGAGTAGATTCCTTCTGGATGTTGTAGTCTGACAGTGTGCGGCCATCTTCT 13996 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | |||||||||||||| || ||| | |||||||||||| Sbjct 13997 AGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 14056 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || |||||| | ||| ||||| ||||||| || | || ||||| ||| Sbjct 14057 ATCTTAGCTTTTACATTCTCGATGGTATCAGCAGGCTCGACCTCCAAAGTGATGGTCTTA 14116 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || || || || || || || ||||| || Sbjct 14117 CCAGTCAACGTCTTCACGAAGATCTGCATATT 14148 >seq7468 Length=24208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 24675 CGGCATATGGGGCAATTGGTCAATGATGACGCGCACTTGCCGCACGCTACCACATGCCCG 24734 ||||| |||||||| ||| | || |||||||||| ||||||| ||||| |||||| Sbjct 18974 CGGCACATGGGGCACTTGTTGGTGGAGAGCGCGCACTTGGCGCACGCCACCACGTGCCCG 19033 Query 24735 CACGGCACGAAGCACACGATTTTTTCATCGTAATAGCAAATCTTGCAAAGCTT 24787 |||||||||||||||||| | || || ||||| |||||||| ||||| Sbjct 19034 CACGGCACGAAGCACACGTTGCGCTCCTCCACGTAGCAGATCTTGCACAGCTT 19086 >seq3481 Length=53562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 18804 TTTATTGTTTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATAT 18863 |||| || || ||||||| | ||| | ||||| ||| | ||||| ||||| || |||| Sbjct 24289 TTTAATGCTTACCTCCTCTTAGCCTGAGCACCAAGTGAAGAGTAGATTCCTTCTGGATAT 24230 Query 18864 TGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCT 18923 ||||||| | || || | | || ||||||||||| || || | || || | ||||| Sbjct 24229 TGTAATCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCT 24170 Query 18924 GATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGC 18983 | ||| || | ||||| || || ||| || || || | | | || || | Sbjct 24169 GGTCCGGCGGAATACCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTC-C 24111 Query 18984 CAGG-CTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| |||| || | ||| ||||| || || |||| |||||||| ||||| |||||| Sbjct 24110 GAGGCCTCCACCTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAAATCTGCATT 24051 Query 19043 TT 19044 || Sbjct 24050 TT 24049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414442437712594