Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4530 95.1 1e-14
seq3754 87.8 2e-12
seq3664 87.8 2e-12
seq3481 87.8 2e-12
>seq4530
Length=43051
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | || ||||||||||| || ||| || ||||||||||| || |
Sbjct 12549 ACCACCGCGCAGACGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGA 12608
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || |||| ||||| ||||| ||| || | || | ||||||||| || ||
Sbjct 12609 CAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 12668
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | |||||||||| ||||| | || | | | | |||||||||| || ||
Sbjct 12669 GATGCCTTCCTTGTCCTGGATTTTGGCCTTTAACATTCTCAATGGTATCGGAAGCTTCAA 12728
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| ||||| || || || | || || || || ||||||||
Sbjct 12729 CCTCAAGTGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 12777
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | || ||||| ||||| || ||| || ||||||||||| || |
Sbjct 13006 ACCACCGCGCAGACGCAATACTAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGA 13065
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || |||| ||||| ||||| ||| || | || | ||||||||| || ||
Sbjct 13066 CAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 13125
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| ||||| || | | | | || ||||||| || ||
Sbjct 13126 GATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAAC 13185
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| ||||| || || || | ||| || || || ||||||||
Sbjct 13186 CTCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 13233
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || | ||| || | ||| | ||| || || |||||||||||||||||| || | |
Sbjct 11638 CCACCTCTCAATCTAAGCACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAGTCTGAC 11697
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| | || | || || || ||||| || || | || | ||||||||| || ||
Sbjct 11698 AGTGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 11757
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| ||||| ||| | | | | || || |||| || ||| |
Sbjct 11758 ATGCCTTCCTTGTCTTGGATTTTTGCCTTAACATTCTCGATTGTGTCGGAAGCCTCAACC 11817
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||| ||| ||||| || || || || ||||| ||||| ||||||||
Sbjct 11818 TCGAGTGTGATGGTCTTGCCAGTCAGTGTTTTTACAAAGATCTGCAT 11864
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| ||||||||||| || ||| || ||||||||||| || | || | || ||||
Sbjct 12337 AATACTAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCGTCT 12396
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
||||| ||||| ||| || | || | ||||||||| || || | | ||||||||||
Sbjct 12397 TCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 12456
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||||| || | | | | || ||||||| || || ||| | ||| |||||
Sbjct 12457 TGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACCTCAAGTGTAATGGTC 12516
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || | ||| || || || ||||||||
Sbjct 12517 TTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 12548
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | || ||||| ||||| ||| ||| || ||||||||||| || |
Sbjct 13234 ACCACCGCGCAGACGCAATACTAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 13293
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || | || || ||||| || ||| | | || | | |||||| ||| ||
Sbjct 13294 CAGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGG 13353
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | || |||||| ||||| ||| | | | | || ||||||| || |||
Sbjct 13354 AATGCCCTCTTTGTCCTGGATTTTGGCCTTTACATTCTCAATAGTATCGGAAGCCTCAAC 13413
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || |||||||||||||| | || || || || ||||||||
Sbjct 13414 CTCAAGAGTAATGGTTTTACCGGTCAAGGTCTTAACGAAGATCTGCAT 13461
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | || ||||||||||| || ||| || ||||||||||| || |
Sbjct 13462 ACCACCGCGCAGACGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCTGA 13521
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| | || | || || ||||| || ||| | | || | | |||||| ||| ||
Sbjct 13522 CAGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGG 13581
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | |||||||||| ||||| ||| | | | | |||||||| | || ||
Sbjct 13582 AATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTATCTGAAGCTTCAAC 13641
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| || || || || || || ||||| || || ||||||||
Sbjct 13642 CTCAAGTGTGATTGTCTTGCCAGTCAGTGTTTTTACGAAGATCTGCAT 13689
>seq3754
Length=50117
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| |||||||| ||| || ||||| ||||||||||| | || | || || |||||||
Sbjct 1664 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTG-CGTCCGTCCTC 1606
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||| || || || |||| | ||||||||| || ||| | | || |||||
Sbjct 1605 CAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTG 1546
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | ||||| || | || ||| || | ||||| |||||
Sbjct 1545 GATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTT 1486
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || |||||||| ||||||||
Sbjct 1485 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 1456
>seq3664
Length=101255
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| |||||||| ||| || ||||| ||||||||||| | || | || || |||||||
Sbjct 96126 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTG-CGTCCGTCCTC 96068
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||| || || || |||| | ||||||||| || ||| | | || |||||
Sbjct 96067 CAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTG 96008
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | ||||| || | || ||| || | ||||| |||||
Sbjct 96007 GATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTT 95948
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || |||||||| ||||||||
Sbjct 95947 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 95918
>seq3481
Length=53562
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| | | ||| | ||| || ||||| || ||||| || || |||||||| |
Sbjct 24279 ACCTCCTCTTAGCCTGAGCACCAAGTGAAGAGTAGATTCCTTCTGGATATTGTAATCGGA 24220
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | || |||||||| || ||| || | || | ||||||||| ||| |||
Sbjct 24219 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 24160
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || ||||| ||| ||| || ||| | | | ||||| || | | ||||
Sbjct 24159 AATACCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCCGAGGCCTCCAC 24100
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || ||||| || ||||| || |||||||||||
Sbjct 24099 CTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 24052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421118737691801
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |