Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4530 95.1 1e-14 seq3754 87.8 2e-12 seq3664 87.8 2e-12 seq3481 87.8 2e-12 >seq4530 Length=43051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | || ||||||||||| || ||| || ||||||||||| || | Sbjct 12549 ACCACCGCGCAGACGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGA 12608 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || |||| ||||| ||||| ||| || | || | ||||||||| || || Sbjct 12609 CAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 12668 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| ||||| | || | | | | |||||||||| || || Sbjct 12669 GATGCCTTCCTTGTCCTGGATTTTGGCCTTTAACATTCTCAATGGTATCGGAAGCTTCAA 12728 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| ||||| || || || | || || || || |||||||| Sbjct 12729 CCTCAAGTGTGATGGTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 12777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | || ||||| ||||| || ||| || ||||||||||| || | Sbjct 13006 ACCACCGCGCAGACGCAATACTAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCCGA 13065 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || |||| ||||| ||||| ||| || | || | ||||||||| || || Sbjct 13066 CAGTGTGCGTCCGTCTTCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGG 13125 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||||| || | | | | || ||||||| || || Sbjct 13126 GATGCCTTCCTTGTCCTGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAAC 13185 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| ||||| || || || | ||| || || || |||||||| Sbjct 13186 CTCAAGTGTAATGGTCTTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 13233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||| || | ||| | ||| || || |||||||||||||||||| || | | Sbjct 11638 CCACCTCTCAATCTAAGCACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAGTCTGAC 11697 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || | || || || ||||| || || | || | ||||||||| || || Sbjct 11698 AGTGTGCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGG 11757 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||||| ||| | | | | || || |||| || ||| | Sbjct 11758 ATGCCTTCCTTGTCTTGGATTTTTGCCTTAACATTCTCGATTGTGTCGGAAGCCTCAACC 11817 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| ||| ||||| || || || || ||||| ||||| |||||||| Sbjct 11818 TCGAGTGTGATGGTCTTGCCAGTCAGTGTTTTTACAAAGATCTGCAT 11864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || ||||||||||| || ||| || ||||||||||| || | || | || |||| Sbjct 12337 AATACTAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCGTCT 12396 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 ||||| ||||| ||| || | || | ||||||||| || || | | |||||||||| Sbjct 12397 TCCAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 12456 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||| || | | | | || ||||||| || || ||| | ||| ||||| Sbjct 12457 TGGATTTTAGCTTTAACATTCTCAATCGTATCGGAAGCTTCAACCTCAAGTGTAATGGTC 12516 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| || || || |||||||| Sbjct 12517 TTGCCAGTCAAAGTCTTTACGAAGATCTGCAT 12548 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | || ||||| ||||| ||| ||| || ||||||||||| || | Sbjct 13234 ACCACCGCGCAGACGCAATACTAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGA 13293 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || | || || ||||| || ||| | | || | | |||||| ||| || Sbjct 13294 CAGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGG 13353 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| ||||| ||| | | | | || ||||||| || ||| Sbjct 13354 AATGCCCTCTTTGTCCTGGATTTTGGCCTTTACATTCTCAATAGTATCGGAAGCCTCAAC 13413 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || |||||||||||||| | || || || || |||||||| Sbjct 13414 CTCAAGAGTAATGGTTTTACCGGTCAAGGTCTTAACGAAGATCTGCAT 13461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | || ||||||||||| || ||| || ||||||||||| || | Sbjct 13462 ACCACCGCGCAGACGCAATACTAAATGAAGGGTCGACTCTTTCTGAATGTTGTAGTCTGA 13521 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || | || | || || ||||| || ||| | | || | | |||||| ||| || Sbjct 13522 CAGTGTGCGGCCATCTTCTAGCTGTTTTCCGGCAAAGATAAGTCTCTGCTGGTCCGGGGG 13581 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||||| ||| | | | | |||||||| | || || Sbjct 13582 AATGCCTTCCTTGTCCTGGATTTTGGCCTTTACATTCTCAATGGTATCTGAAGCTTCAAC 13641 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || || || || || || ||||| || || |||||||| Sbjct 13642 CTCAAGTGTGATTGTCTTGCCAGTCAGTGTTTTTACGAAGATCTGCAT 13689 >seq3754 Length=50117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || |||||||| ||| || ||||| ||||||||||| | || | || || ||||||| Sbjct 1664 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTG-CGTCCGTCCTC 1606 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || || || |||| | ||||||||| || ||| | | || ||||| Sbjct 1605 CAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTG 1546 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | || ||| || | ||||| ||||| Sbjct 1545 GATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTT 1486 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 1485 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 1456 >seq3664 Length=101255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || |||||||| ||| || ||||| ||||||||||| | || | || || ||||||| Sbjct 96126 ACCAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCCGACAGAGTG-CGTCCGTCCTC 96068 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||| || || || |||| | ||||||||| || ||| | | || ||||| Sbjct 96067 CAGCTGTTTGCCAGCGAAAATCAGACGCTGCTGGTCTGGCGGAATTCCCTCTTTGTCTTG 96008 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | ||||| || | || ||| || | ||||| ||||| Sbjct 96007 GATCTTAGCCTTTACATTCTCAATGGTGTCAGAAGCCTCAACTTCCAAAGTTATTGTTTT 95948 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 95947 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 95918 >seq3481 Length=53562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | | ||| | ||| || ||||| || ||||| || || |||||||| | Sbjct 24279 ACCTCCTCTTAGCCTGAGCACCAAGTGAAGAGTAGATTCCTTCTGGATATTGTAATCGGA 24220 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || |||||||| || ||| || | || | ||||||||| ||| ||| Sbjct 24219 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 24160 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||| ||| ||| || ||| | | | ||||| || | | |||| Sbjct 24159 AATACCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCCGAGGCCTCCAC 24100 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| || ||||| || ||||||||||| Sbjct 24099 CTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 24052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421118737691801