Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_006635.1
Length=29874
Score E
Sequences producing significant alignments: (Bits) Value
seq75 87.8 3e-13
seq7012 86.0 1e-12
seq8942 82.4 1e-11
seq3901 80.6 5e-11
>seq75
Length=298925
Score = 87.8 bits (96), Expect = 3e-13
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574
|||||||||||||| | ||| ||||| |||| ||| | |||||||| |||| |||
Sbjct 261720 AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 261779
Query 17575 TGGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAA 17634
|| | ||| ||||||||||| |||||| ||| || ||| ||||||||||||||
Sbjct 261780 TGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGTTTTTGAA 261839
Query 17635 AACGATTGATTCAGCAGATTA 17655
||| ||| ||| | |||
Sbjct 261840 GTTGATCGATAAAGCCGGTTA 261860
>seq7012
Length=26895
Score = 86.0 bits (94), Expect = 1e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 17516 AAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTTT 17575
||||| ||||||| | ||| ||||| |||| ||| | |||||||| |||| ||||
Sbjct 20219 AAAAATACTTTTTCTGGTTTCTTTCGTTCATGATATCTCTCGAACGAATCAACCGCTTTT 20160
Query 17576 GGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAAA 17635
| | ||| ||||||||||| ||||||| ||| || ||| ||||||||||||||
Sbjct 20159 GACCAGCTTGGTGGCGATCGACGTGGTTTTTTAAGCTCAAAGGCGGATTAGTTTTTGAAG 20100
Query 17636 ACGATTGATTCAGCAGATTA 17655
||| ||| ||| | |||
Sbjct 20099 TTGATCGATAAAGCTGGTTA 20080
>seq8942
Length=39774
Score = 82.4 bits (90), Expect = 1e-11
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574
|||||||| ||||| | ||| ||||| |||| ||| | |||||||| |||| |||
Sbjct 3441 AAAAAACATTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 3382
Query 17575 TGG-TCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGA 17633
|| | || ||| ||||||||||| |||||| ||| || ||| |||||||||||||
Sbjct 3381 TGACTAGC-TTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGTTTTTGA 3323
Query 17634 AAACGATTGATTCAGCAGATTA 17655
| ||| ||| ||| | |||
Sbjct 3322 AGTTGATCGATAAAGCCGGTTA 3301
>seq3901
Length=45253
Score = 80.6 bits (88), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574
|||||||||||||| | ||| ||||| |||| ||| | |||||||| |||| |||
Sbjct 12504 AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 12563
Query 17575 TGGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAA 17634
|| | ||| ||||||||||| |||||| || || ||| ||||||||||||||
Sbjct 12564 TGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGC--AAAGGCGGATTAGTTTTTGAA 12621
Query 17635 AACGATTGATTCAGCAGATTA 17655
||| ||| ||| | |||
Sbjct 12622 GTTGATCGATAAAGCCGGTTA 12642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 95445947651832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |