Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq75 87.8 3e-13 seq7012 86.0 1e-12 seq8942 82.4 1e-11 seq3901 80.6 5e-11 >seq75 Length=298925 Score = 87.8 bits (96), Expect = 3e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574 |||||||||||||| | ||| ||||| |||| ||| | |||||||| |||| ||| Sbjct 261720 AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 261779 Query 17575 TGGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAA 17634 || | ||| ||||||||||| |||||| ||| || ||| |||||||||||||| Sbjct 261780 TGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGTTTTTGAA 261839 Query 17635 AACGATTGATTCAGCAGATTA 17655 ||| ||| ||| | ||| Sbjct 261840 GTTGATCGATAAAGCCGGTTA 261860 >seq7012 Length=26895 Score = 86.0 bits (94), Expect = 1e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 17516 AAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTTT 17575 ||||| ||||||| | ||| ||||| |||| ||| | |||||||| |||| |||| Sbjct 20219 AAAAATACTTTTTCTGGTTTCTTTCGTTCATGATATCTCTCGAACGAATCAACCGCTTTT 20160 Query 17576 GGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAAA 17635 | | ||| ||||||||||| ||||||| ||| || ||| |||||||||||||| Sbjct 20159 GACCAGCTTGGTGGCGATCGACGTGGTTTTTTAAGCTCAAAGGCGGATTAGTTTTTGAAG 20100 Query 17636 ACGATTGATTCAGCAGATTA 17655 ||| ||| ||| | ||| Sbjct 20099 TTGATCGATAAAGCTGGTTA 20080 >seq8942 Length=39774 Score = 82.4 bits (90), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574 |||||||| ||||| | ||| ||||| |||| ||| | |||||||| |||| ||| Sbjct 3441 AAAAAACATTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 3382 Query 17575 TGG-TCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGA 17633 || | || ||| ||||||||||| |||||| ||| || ||| ||||||||||||| Sbjct 3381 TGACTAGC-TTGGTGGCGATCGACGTGGTTTTTCAAGCTCAAAGGCGGATTAGTTTTTGA 3323 Query 17634 AAACGATTGATTCAGCAGATTA 17655 | ||| ||| ||| | ||| Sbjct 3322 AGTTGATCGATAAAGCCGGTTA 3301 >seq3901 Length=45253 Score = 80.6 bits (88), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 17515 AAAAAACACTTTTTTCCAAATATTTTGTTCAGGATACCTCACAAACGAATCGACCGATTT 17574 |||||||||||||| | ||| ||||| |||| ||| | |||||||| |||| ||| Sbjct 12504 AAAAAACACTTTTTCGGGTTTCTTTCGTTCACGATATCTCTCGAACGAATCAACCGCTTT 12563 Query 17575 TGGTCGCGTTGACGGCGATCGACGCAGTTTTTTGGGCTTAAGGGCTGATTAGTTTTTGAA 17634 || | ||| ||||||||||| |||||| || || ||| |||||||||||||| Sbjct 12564 TGACCAGCTTGGTGGCGATCGACGTGGTTTTTCAAGC--AAAGGCGGATTAGTTTTTGAA 12621 Query 17635 AACGATTGATTCAGCAGATTA 17655 ||| ||| ||| | ||| Sbjct 12622 GTTGATCGATAAAGCCGGTTA 12642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95445947651832