Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq3901 123 5e-24 seq75 122 2e-23 seq8942 113 9e-21 seq2748 109 1e-19 seq7012 105 1e-18 >seq3901 Length=45253 Score = 123 bits (136), Expect = 5e-24 Identities = 122/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 22898 AAAAAATAAAATTTTCAAACAAAG--GTTCATTTGGAATAACTTTTTAATGACTTTACCG 22955 |||||| |||||||| |||| ||| ||||||||||||||| | | ||||| || Sbjct 12687 AAAAAAAAAAATTTTTTTTGAAAGTGGTTTTTTTGGAATAACTTTTAACCGGCTTTATCG 12628 Query 22956 ATCGATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCC 23015 ||| | | |||||||||||| ||| || || |||||||||||||||| |||||| | Sbjct 12627 ATCAACTTCAAAAACTAATCCGCCTTTG--CTTGAAAAACCACGTCGATCGCCACCAAGC 12570 Query 23016 CGGCCAGAATCGGTTGATTCGTTCCGGAGATATCGT 23051 || || || |||||||||||||| |||||||||| Sbjct 12569 TGGTCAAAAGCGGTTGATTCGTTCGAGAGATATCGT 12534 Score = 89.7 bits (98), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 9/122 (7%) Strand=Plus/Minus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| Sbjct 12396 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 12341 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821 |||||||||| |||| | | |||||||| || ||||| ||| | ||||| | Sbjct 12340 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 12286 Query 23822 TC 23823 || Sbjct 12285 TC 12284 >seq75 Length=298925 Score = 122 bits (134), Expect = 2e-23 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 ||||||||||||||| | | ||||| ||||| | | |||||||||||| ||| || | | Sbjct 261874 TTTGGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 261815 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 | |||||||||||||||| |||||| | || || || |||||||||||||| ||||| Sbjct 261814 TTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGAT 261755 Query 23047 ATCGT 23051 ||||| Sbjct 261754 ATCGT 261750 Score = 87.8 bits (96), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 9/119 (8%) Strand=Plus/Minus Query 23705 TCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCTATC 23764 |||||||||||||| |||||||||||| |||||| ||||| |||||||||||||| Sbjct 261610 TCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCTATC 261555 Query 23765 AGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGCTC 23823 ||||||| |||| | | |||||||| || ||||| ||| | ||||| ||| Sbjct 261554 AGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAACTC 261501 >seq8942 Length=39774 Score = 113 bits (124), Expect = 9e-21 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 |||||||| |||||| | | ||||| ||||| | | |||||||||||| ||| || | | Sbjct 3287 TTTGGAATTACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 3346 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 | |||||||||||||||| |||||| | | || || |||||||||||||| ||||| Sbjct 3347 TTGAAAAACCACGTCGATCGCCACCAAGCTAGTCAAAAGCGGTTGATTCGTTCGAGAGAT 3406 Query 23047 ATCGT 23051 ||||| Sbjct 3407 ATCGT 3411 Score = 89.7 bits (98), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 9/122 (7%) Strand=Plus/Plus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| Sbjct 3549 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 3604 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821 |||||||||| |||| | | |||||||| || ||||| ||| | ||||| | Sbjct 3605 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 3659 Query 23822 TC 23823 || Sbjct 3660 TC 3661 >seq2748 Length=62016 Score = 109 bits (120), Expect = 1e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 ||||||||||||||| | | ||||| ||||| | | ||||||||||| ||| || | Sbjct 26767 TTTGGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATTCGCCTTTGGGC 26826 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 | |||||||||||||||| |||||| | || | || |||||||||||||| ||||| Sbjct 26827 TTGAAAAACCACGTCGATCGCCACCAAGCTGGTGAAAAGCGGTTGATTCGTTCGAGAGAT 26886 Query 23047 ATCGT 23051 ||||| Sbjct 26887 ATCGT 26891 Score = 87.8 bits (96), Expect = 4e-13 Identities = 65/76 (86%), Gaps = 4/76 (5%) Strand=Plus/Plus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| Sbjct 27029 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 27084 Query 23762 ATCAGACTTTTGAGCT 23777 |||||||||| ||||| Sbjct 27085 ATCAGACTTTCGAGCT 27100 >seq7012 Length=26895 Score = 105 bits (116), Expect = 1e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986 ||| ||||||||||| | ||||| ||||| | | |||||||||||| ||| || | | Sbjct 20066 TTTTGAATAACTTTTAACCAGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 20125 Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046 | ||||||||||||||| |||||| | || || || |||||||||||||| ||||| Sbjct 20126 TTAAAAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGAT 20185 Query 23047 ATC 23049 ||| Sbjct 20186 ATC 20188 Score = 89.7 bits (98), Expect = 1e-13 Identities = 93/122 (76%), Gaps = 9/122 (7%) Strand=Plus/Plus Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761 || |||||||||||||| |||||||||||| |||||| ||||| ||||||||||| Sbjct 20339 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 20394 Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821 |||||||||| |||| | | |||||||| || ||||| ||| | ||||| | Sbjct 20395 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 20449 Query 23822 TC 23823 || Sbjct 20450 TC 20451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102157490692908