Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_006646.1
Length=31972
Score E
Sequences producing significant alignments: (Bits) Value
seq3901 123 5e-24
seq75 122 2e-23
seq8942 113 9e-21
seq2748 109 1e-19
seq7012 105 1e-18
>seq3901
Length=45253
Score = 123 bits (136), Expect = 5e-24
Identities = 122/156 (78%), Gaps = 4/156 (3%)
Strand=Plus/Minus
Query 22898 AAAAAATAAAATTTTCAAACAAAG--GTTCATTTGGAATAACTTTTTAATGACTTTACCG 22955
|||||| |||||||| |||| ||| ||||||||||||||| | | ||||| ||
Sbjct 12687 AAAAAAAAAAATTTTTTTTGAAAGTGGTTTTTTTGGAATAACTTTTAACCGGCTTTATCG 12628
Query 22956 ATCGATTCCAAAAACTAATCAGCCCTTAACCTCGAAAAACCACGTCGATTGCCACCGGCC 23015
||| | | |||||||||||| ||| || || |||||||||||||||| |||||| |
Sbjct 12627 ATCAACTTCAAAAACTAATCCGCCTTTG--CTTGAAAAACCACGTCGATCGCCACCAAGC 12570
Query 23016 CGGCCAGAATCGGTTGATTCGTTCCGGAGATATCGT 23051
|| || || |||||||||||||| ||||||||||
Sbjct 12569 TGGTCAAAAGCGGTTGATTCGTTCGAGAGATATCGT 12534
Score = 89.7 bits (98), Expect = 1e-13
Identities = 93/122 (76%), Gaps = 9/122 (7%)
Strand=Plus/Minus
Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761
|| |||||||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 12396 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 12341
Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821
|||||||||| |||| | | |||||||| || ||||| ||| | ||||| |
Sbjct 12340 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 12286
Query 23822 TC 23823
||
Sbjct 12285 TC 12284
>seq75
Length=298925
Score = 122 bits (134), Expect = 2e-23
Identities = 102/125 (82%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986
||||||||||||||| | | ||||| ||||| | | |||||||||||| ||| || | |
Sbjct 261874 TTTGGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 261815
Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046
| |||||||||||||||| |||||| | || || || |||||||||||||| |||||
Sbjct 261814 TTGAAAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGAT 261755
Query 23047 ATCGT 23051
|||||
Sbjct 261754 ATCGT 261750
Score = 87.8 bits (96), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 9/119 (8%)
Strand=Plus/Minus
Query 23705 TCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCTATC 23764
|||||||||||||| |||||||||||| |||||| ||||| ||||||||||||||
Sbjct 261610 TCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCTATC 261555
Query 23765 AGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGCTC 23823
||||||| |||| | | |||||||| || ||||| ||| | ||||| |||
Sbjct 261554 AGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAACTC 261501
>seq8942
Length=39774
Score = 113 bits (124), Expect = 9e-21
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986
|||||||| |||||| | | ||||| ||||| | | |||||||||||| ||| || | |
Sbjct 3287 TTTGGAATTACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 3346
Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046
| |||||||||||||||| |||||| | | || || |||||||||||||| |||||
Sbjct 3347 TTGAAAAACCACGTCGATCGCCACCAAGCTAGTCAAAAGCGGTTGATTCGTTCGAGAGAT 3406
Query 23047 ATCGT 23051
|||||
Sbjct 3407 ATCGT 3411
Score = 89.7 bits (98), Expect = 1e-13
Identities = 93/122 (76%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761
|| |||||||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 3549 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 3604
Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821
|||||||||| |||| | | |||||||| || ||||| ||| | ||||| |
Sbjct 3605 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 3659
Query 23822 TC 23823
||
Sbjct 3660 TC 3661
>seq2748
Length=62016
Score = 109 bits (120), Expect = 1e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986
||||||||||||||| | | ||||| ||||| | | ||||||||||| ||| || |
Sbjct 26767 TTTGGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATTCGCCTTTGGGC 26826
Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046
| |||||||||||||||| |||||| | || | || |||||||||||||| |||||
Sbjct 26827 TTGAAAAACCACGTCGATCGCCACCAAGCTGGTGAAAAGCGGTTGATTCGTTCGAGAGAT 26886
Query 23047 ATCGT 23051
|||||
Sbjct 26887 ATCGT 26891
Score = 87.8 bits (96), Expect = 4e-13
Identities = 65/76 (86%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761
|| |||||||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 27029 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 27084
Query 23762 ATCAGACTTTTGAGCT 23777
|||||||||| |||||
Sbjct 27085 ATCAGACTTTCGAGCT 27100
>seq7012
Length=26895
Score = 105 bits (116), Expect = 1e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 22927 TTTGGAATAACTTTTTAATGACTTTACCGATCGATTCCAAAAACTAATCAGCCCTTAACC 22986
||| ||||||||||| | ||||| ||||| | | |||||||||||| ||| || | |
Sbjct 20066 TTTTGAATAACTTTTAACCAGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGC 20125
Query 22987 TCGAAAAACCACGTCGATTGCCACCGGCCCGGCCAGAATCGGTTGATTCGTTCCGGAGAT 23046
| ||||||||||||||| |||||| | || || || |||||||||||||| |||||
Sbjct 20126 TTAAAAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGAT 20185
Query 23047 ATC 23049
|||
Sbjct 20186 ATC 20188
Score = 89.7 bits (98), Expect = 1e-13
Identities = 93/122 (76%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 23702 CAGTCAAAAGTTATTGCAGTTTGAAAATTCATAAAATAAGTAGTGTTGGATGAAACTTCT 23761
|| |||||||||||||| |||||||||||| |||||| ||||| |||||||||||
Sbjct 20339 CATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATA----GTGTTCTATGAAACTTCT 20394
Query 23762 ATCAGACTTTTGAGCTTAAATTAAAAAGCTCAAAAGCGTAGAACAGCTATCTTTTTGAGC 23821
|||||||||| |||| | | |||||||| || ||||| ||| | ||||| |
Sbjct 20395 ATCAGACTTTCGAGC-----TGGGAGAGCTCAAATGCATAGAAATATTATTTCTTTGAAC 20449
Query 23822 TC 23823
||
Sbjct 20450 TC 20451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 102157490692908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |