Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq6422 176 9e-40 seq3364 105 1e-18 >seq6422 Length=30189 Score = 176 bits (194), Expect = 9e-40 Identities = 247/347 (71%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 4325 TGGTACCTGCCATCAATGAACCATTGCCTATTTCTGTTCCTGGACTTTCTATGGTACAAA 4384 || ||||||| |||||||||||||||||| | |||| |||||||||| || ||| Sbjct 24493 TGCTACCTGCGATCAATGAACCATTGCCTGCATATGTTTTTGGACTTTCTTTGCCACAGG 24434 Query 4385 ATGTTAGCACGAATGACTTGATATTCGACGTAAATGATCCAATGGGCGAACGTATCCAAA 4444 | | |||||| | ||||| || | || | | ||| || |||| || | Sbjct 24433 ACGCTAGCACAGGTCGCTTGACTTTGAATTTAGACACTGCAAAGGCAAAACGCATTGCGA 24374 Query 4445 ATTTGACAACTACATTCAACGCCTTCCAGCAATCATTTGACCGTATTGTGCGTTTAGCAA 4504 | || | || ||||||| |||| ||||| |||||||| |||| ||||| |||| | | Sbjct 24373 AGTTAATAAAAGGATTCAACACCTTTCAGCAGTCATTTGATCGTACTGTGCATTTAACGA 24314 Query 4505 GTCCGTTCCTCACCGACAAAGAAATCAATCCATTGCTGCGGAAAAGTGCCAAAGATGATT 4564 |||||| |||||| || |||||| |||| || ||||||||||| | | |||||| Sbjct 24313 ATCCGTTTCTCACCATAAACGAAATCGATCCGCTGAAACGGAAAAGTGCTAGAAATGATT 24254 Query 4565 TCATTCGACAAATGATAGAGATTGAATGGCTAACCACGGTCACCTCGCACAGAATGAAGT 4624 || ||||||||| | |||||| ||||| ||| | | || | ||||||||||||||| Sbjct 24253 TCGTTCGACAAACTAAAGAGATCAAATGGGTAAGCGCAGTTGCTTCGCACAGAATGAAGC 24194 Query 4625 TCATCGAACTGTATAAACTACTTAGCTCCACGTACAACAAACTTAAA 4671 | || | || ||| | |||||| | || || |||| | || ||| Sbjct 24193 TAGTCAAGCTATATGAGGAACTTAGTTTCATGTTCAACTATCTCAAA 24147 Score = 105 bits (116), Expect = 1e-18 Identities = 118/159 (74%), Gaps = 18/159 (11%) Strand=Plus/Minus Query 1346 CATTTTGCTTTATTAACCTATGACATCTATAAGATACTACATGAAATTCTCTGGAAAAAT 1405 ||||||| ||||||||||| ||||||||||| |||||| |||| || || |||||| || Sbjct 26563 CATTTTGTTTTATTAACCTGTGACATCTATATGATACTGCATGGAAGTCACTGGAAGAAC 26504 Query 1406 AACTGATAAAACAAACAAAAATAGTTTCGTAAAATATTGACCTGTTTGACGTACTTTAAG 1465 ||||| |||| || | ||||| | |||||| ||| ||| | ||||| Sbjct 26503 GGCTGATGAAACGAAGAGAAATACTGTCGTAAGATACTGA--------AGATACTT---- 26456 Query 1466 GTCAATTGTTTGTCGTAGCTGGAATTTTCAAGTTGCTTT 1504 ||||| |||||||||||||||||||| ||| ||| Sbjct 26455 GTCAA------GTCGTAGCTGGAATTTTCAAATTGTTTT 26423 Score = 98.7 bits (108), Expect = 2e-16 Identities = 168/238 (71%), Gaps = 18/238 (8%) Strand=Plus/Minus Query 1695 TCAATAACTGATGAAACCAAGTTATT---CTGAAGCTAAGTCAGTTAGAAATTACGTGAC 1751 ||||| ||||||| | |||||| || ||||||| | |||| |||||| Sbjct 26367 TCAATGGCTGATGATAACAAGTTGTTGTTCTGAAGC-AGGTCA------AATTACA---- 26319 Query 1752 CCTTGAACCCTTTT-ATCTAGTTCTGATAACTAAACAGTATAAAAGATCTAGCTGAACCA 1810 |||||||| |||| || | || ||||||||||| ||||| ||||| | |||||| Sbjct 26318 -CTTGAACCTTTTTTATTGACTTTTGATAACTAAATTGTATATAAGATAAAACTGAACAG 26260 Query 1811 AC-AATAGACACAAGTGTCTTAGAAGTTATATCATAATGTTCGCTAGAACTATCACCGTA 1869 || || || || |||||| | |||| ||| |||||||||| || ||| ||||| Sbjct 26259 ACGAACAG-CATAAGTGTTTCGAAAGTGTTATGATAATGTTCGGTAATACTGGAACCGTC 26201 Query 1870 CTCTTCGTGGCTGTCCTCAGTATTTCATGTAAGTATTAATTATTAATATTATAATATT 1927 | ||| | ||| | ||| |||||||||||||| ||||| | ||| | |||| || Sbjct 26200 TTGTTCATCGCTTCCTTCATTATTTCATGTAAGTGTTAATACTAAATGATTTAATGTT 26143 >seq3364 Length=54413 Score = 105 bits (116), Expect = 1e-18 Identities = 118/159 (74%), Gaps = 18/159 (11%) Strand=Plus/Minus Query 1346 CATTTTGCTTTATTAACCTATGACATCTATAAGATACTACATGAAATTCTCTGGAAAAAT 1405 ||||||| ||||||||||| ||||||||||| |||||| |||| || || |||||| || Sbjct 50459 CATTTTGTTTTATTAACCTGTGACATCTATATGATACTGCATGGAAGTCACTGGAAGAAC 50400 Query 1406 AACTGATAAAACAAACAAAAATAGTTTCGTAAAATATTGACCTGTTTGACGTACTTTAAG 1465 ||||| |||| || | ||||| | |||||| ||| ||| | ||||| Sbjct 50399 GGCTGATGAAACGAAGAGAAATACTGTCGTAAGATACTGA--------AGATACTT---- 50352 Query 1466 GTCAATTGTTTGTCGTAGCTGGAATTTTCAAGTTGCTTT 1504 ||||| |||||||||||||||||||| ||| ||| Sbjct 50351 GTCAA------GTCGTAGCTGGAATTTTCAAATTGTTTT 50319 Score = 98.7 bits (108), Expect = 2e-16 Identities = 168/238 (71%), Gaps = 18/238 (8%) Strand=Plus/Minus Query 1695 TCAATAACTGATGAAACCAAGTTATT---CTGAAGCTAAGTCAGTTAGAAATTACGTGAC 1751 ||||| ||||||| | |||||| || ||||||| | |||| |||||| Sbjct 50263 TCAATGGCTGATGATAACAAGTTGTTGTTCTGAAGC-AGGTCA------AATTACA---- 50215 Query 1752 CCTTGAACCCTTTT-ATCTAGTTCTGATAACTAAACAGTATAAAAGATCTAGCTGAACCA 1810 |||||||| |||| || | || ||||||||||| ||||| ||||| | |||||| Sbjct 50214 -CTTGAACCTTTTTTATTGACTTTTGATAACTAAATTGTATATAAGATAAAACTGAACAG 50156 Query 1811 AC-AATAGACACAAGTGTCTTAGAAGTTATATCATAATGTTCGCTAGAACTATCACCGTA 1869 || || || || |||||| | |||| ||| |||||||||| || ||| ||||| Sbjct 50155 ACGAACAG-CATAAGTGTTTCGAAAGTGTTATGATAATGTTCGGTAATACTGGAACCGTC 50097 Query 1870 CTCTTCGTGGCTGTCCTCAGTATTTCATGTAAGTATTAATTATTAATATTATAATATT 1927 | ||| | ||| | ||| |||||||||||||| ||||| | ||| | |||| || Sbjct 50096 TTGTTCATCGCTTCCTTCATTATTTCATGTAAGTGTTAATACTAAATGATTTAATGTT 50039 Score = 82.4 bits (90), Expect = 2e-11 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 336 ATACAACAAACAATAAACTTTTTGACTAAATCATGCCAAGACTTTAAGATAGAGCTGTAT 395 |||||||||| || ||| ||||||||||||||||||||| || || | | ||||| Sbjct 54186 ATACAACAAAATATTAACACTTTGACTAAATCATGCCAAGAATTGGAGGGAAAATTGTAT 54127 Query 396 GAGCTGAT-TAAGAAAGGTAAAAATGTTCGAACTATAGCAGATATCAATATGCAAGTTAT 454 || || | | || |||||| ||||| || ||||||| | | ||| | | ||||| Sbjct 54126 CAGGTGCTCTGAG-AAGGTATAAATGATCCAACTATAATAACTCTCATTCAAGATGTTAT 54068 Query 455 GTCGATTGAA--AGTTCCCTTCAAAATGAACAATATCTTCTAGATGACTTTAATAATATC 512 ||||||| || | |||||||| | ||| | | ||||| | | || ||| | | Sbjct 54067 AAAGATTGAATTAGAT--CTTCAAAACCAGCAAAAACCTCTAGTTCAATTCAATTACGTA 54010 Query 513 AAGCCATCGACTCCGCCAAAAGTTGATTATTTTGATAGGGACTTA 557 ||| | ||||| ||||| ||| | |||||||| || ||| Sbjct 54009 TTGCCGTTGACTCAATCAAAACACGATGACTTTGATAGTGATTTA 53965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102592557353340