Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_006649.1
Length=32108
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 176 9e-40
seq3364 105 1e-18
>seq6422
Length=30189
Score = 176 bits (194), Expect = 9e-40
Identities = 247/347 (71%), Gaps = 0/347 (0%)
Strand=Plus/Minus
Query 4325 TGGTACCTGCCATCAATGAACCATTGCCTATTTCTGTTCCTGGACTTTCTATGGTACAAA 4384
|| ||||||| |||||||||||||||||| | |||| |||||||||| || |||
Sbjct 24493 TGCTACCTGCGATCAATGAACCATTGCCTGCATATGTTTTTGGACTTTCTTTGCCACAGG 24434
Query 4385 ATGTTAGCACGAATGACTTGATATTCGACGTAAATGATCCAATGGGCGAACGTATCCAAA 4444
| | |||||| | ||||| || | || | | ||| || |||| || |
Sbjct 24433 ACGCTAGCACAGGTCGCTTGACTTTGAATTTAGACACTGCAAAGGCAAAACGCATTGCGA 24374
Query 4445 ATTTGACAACTACATTCAACGCCTTCCAGCAATCATTTGACCGTATTGTGCGTTTAGCAA 4504
| || | || ||||||| |||| ||||| |||||||| |||| ||||| |||| | |
Sbjct 24373 AGTTAATAAAAGGATTCAACACCTTTCAGCAGTCATTTGATCGTACTGTGCATTTAACGA 24314
Query 4505 GTCCGTTCCTCACCGACAAAGAAATCAATCCATTGCTGCGGAAAAGTGCCAAAGATGATT 4564
|||||| |||||| || |||||| |||| || ||||||||||| | | ||||||
Sbjct 24313 ATCCGTTTCTCACCATAAACGAAATCGATCCGCTGAAACGGAAAAGTGCTAGAAATGATT 24254
Query 4565 TCATTCGACAAATGATAGAGATTGAATGGCTAACCACGGTCACCTCGCACAGAATGAAGT 4624
|| ||||||||| | |||||| ||||| ||| | | || | |||||||||||||||
Sbjct 24253 TCGTTCGACAAACTAAAGAGATCAAATGGGTAAGCGCAGTTGCTTCGCACAGAATGAAGC 24194
Query 4625 TCATCGAACTGTATAAACTACTTAGCTCCACGTACAACAAACTTAAA 4671
| || | || ||| | |||||| | || || |||| | || |||
Sbjct 24193 TAGTCAAGCTATATGAGGAACTTAGTTTCATGTTCAACTATCTCAAA 24147
Score = 105 bits (116), Expect = 1e-18
Identities = 118/159 (74%), Gaps = 18/159 (11%)
Strand=Plus/Minus
Query 1346 CATTTTGCTTTATTAACCTATGACATCTATAAGATACTACATGAAATTCTCTGGAAAAAT 1405
||||||| ||||||||||| ||||||||||| |||||| |||| || || |||||| ||
Sbjct 26563 CATTTTGTTTTATTAACCTGTGACATCTATATGATACTGCATGGAAGTCACTGGAAGAAC 26504
Query 1406 AACTGATAAAACAAACAAAAATAGTTTCGTAAAATATTGACCTGTTTGACGTACTTTAAG 1465
||||| |||| || | ||||| | |||||| ||| ||| | |||||
Sbjct 26503 GGCTGATGAAACGAAGAGAAATACTGTCGTAAGATACTGA--------AGATACTT---- 26456
Query 1466 GTCAATTGTTTGTCGTAGCTGGAATTTTCAAGTTGCTTT 1504
||||| |||||||||||||||||||| ||| |||
Sbjct 26455 GTCAA------GTCGTAGCTGGAATTTTCAAATTGTTTT 26423
Score = 98.7 bits (108), Expect = 2e-16
Identities = 168/238 (71%), Gaps = 18/238 (8%)
Strand=Plus/Minus
Query 1695 TCAATAACTGATGAAACCAAGTTATT---CTGAAGCTAAGTCAGTTAGAAATTACGTGAC 1751
||||| ||||||| | |||||| || ||||||| | |||| ||||||
Sbjct 26367 TCAATGGCTGATGATAACAAGTTGTTGTTCTGAAGC-AGGTCA------AATTACA---- 26319
Query 1752 CCTTGAACCCTTTT-ATCTAGTTCTGATAACTAAACAGTATAAAAGATCTAGCTGAACCA 1810
|||||||| |||| || | || ||||||||||| ||||| ||||| | ||||||
Sbjct 26318 -CTTGAACCTTTTTTATTGACTTTTGATAACTAAATTGTATATAAGATAAAACTGAACAG 26260
Query 1811 AC-AATAGACACAAGTGTCTTAGAAGTTATATCATAATGTTCGCTAGAACTATCACCGTA 1869
|| || || || |||||| | |||| ||| |||||||||| || ||| |||||
Sbjct 26259 ACGAACAG-CATAAGTGTTTCGAAAGTGTTATGATAATGTTCGGTAATACTGGAACCGTC 26201
Query 1870 CTCTTCGTGGCTGTCCTCAGTATTTCATGTAAGTATTAATTATTAATATTATAATATT 1927
| ||| | ||| | ||| |||||||||||||| ||||| | ||| | |||| ||
Sbjct 26200 TTGTTCATCGCTTCCTTCATTATTTCATGTAAGTGTTAATACTAAATGATTTAATGTT 26143
>seq3364
Length=54413
Score = 105 bits (116), Expect = 1e-18
Identities = 118/159 (74%), Gaps = 18/159 (11%)
Strand=Plus/Minus
Query 1346 CATTTTGCTTTATTAACCTATGACATCTATAAGATACTACATGAAATTCTCTGGAAAAAT 1405
||||||| ||||||||||| ||||||||||| |||||| |||| || || |||||| ||
Sbjct 50459 CATTTTGTTTTATTAACCTGTGACATCTATATGATACTGCATGGAAGTCACTGGAAGAAC 50400
Query 1406 AACTGATAAAACAAACAAAAATAGTTTCGTAAAATATTGACCTGTTTGACGTACTTTAAG 1465
||||| |||| || | ||||| | |||||| ||| ||| | |||||
Sbjct 50399 GGCTGATGAAACGAAGAGAAATACTGTCGTAAGATACTGA--------AGATACTT---- 50352
Query 1466 GTCAATTGTTTGTCGTAGCTGGAATTTTCAAGTTGCTTT 1504
||||| |||||||||||||||||||| ||| |||
Sbjct 50351 GTCAA------GTCGTAGCTGGAATTTTCAAATTGTTTT 50319
Score = 98.7 bits (108), Expect = 2e-16
Identities = 168/238 (71%), Gaps = 18/238 (8%)
Strand=Plus/Minus
Query 1695 TCAATAACTGATGAAACCAAGTTATT---CTGAAGCTAAGTCAGTTAGAAATTACGTGAC 1751
||||| ||||||| | |||||| || ||||||| | |||| ||||||
Sbjct 50263 TCAATGGCTGATGATAACAAGTTGTTGTTCTGAAGC-AGGTCA------AATTACA---- 50215
Query 1752 CCTTGAACCCTTTT-ATCTAGTTCTGATAACTAAACAGTATAAAAGATCTAGCTGAACCA 1810
|||||||| |||| || | || ||||||||||| ||||| ||||| | ||||||
Sbjct 50214 -CTTGAACCTTTTTTATTGACTTTTGATAACTAAATTGTATATAAGATAAAACTGAACAG 50156
Query 1811 AC-AATAGACACAAGTGTCTTAGAAGTTATATCATAATGTTCGCTAGAACTATCACCGTA 1869
|| || || || |||||| | |||| ||| |||||||||| || ||| |||||
Sbjct 50155 ACGAACAG-CATAAGTGTTTCGAAAGTGTTATGATAATGTTCGGTAATACTGGAACCGTC 50097
Query 1870 CTCTTCGTGGCTGTCCTCAGTATTTCATGTAAGTATTAATTATTAATATTATAATATT 1927
| ||| | ||| | ||| |||||||||||||| ||||| | ||| | |||| ||
Sbjct 50096 TTGTTCATCGCTTCCTTCATTATTTCATGTAAGTGTTAATACTAAATGATTTAATGTT 50039
Score = 82.4 bits (90), Expect = 2e-11
Identities = 156/225 (69%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 336 ATACAACAAACAATAAACTTTTTGACTAAATCATGCCAAGACTTTAAGATAGAGCTGTAT 395
|||||||||| || ||| ||||||||||||||||||||| || || | | |||||
Sbjct 54186 ATACAACAAAATATTAACACTTTGACTAAATCATGCCAAGAATTGGAGGGAAAATTGTAT 54127
Query 396 GAGCTGAT-TAAGAAAGGTAAAAATGTTCGAACTATAGCAGATATCAATATGCAAGTTAT 454
|| || | | || |||||| ||||| || ||||||| | | ||| | | |||||
Sbjct 54126 CAGGTGCTCTGAG-AAGGTATAAATGATCCAACTATAATAACTCTCATTCAAGATGTTAT 54068
Query 455 GTCGATTGAA--AGTTCCCTTCAAAATGAACAATATCTTCTAGATGACTTTAATAATATC 512
||||||| || | |||||||| | ||| | | ||||| | | || ||| | |
Sbjct 54067 AAAGATTGAATTAGAT--CTTCAAAACCAGCAAAAACCTCTAGTTCAATTCAATTACGTA 54010
Query 513 AAGCCATCGACTCCGCCAAAAGTTGATTATTTTGATAGGGACTTA 557
||| | ||||| ||||| ||| | |||||||| || |||
Sbjct 54009 TTGCCGTTGACTCAATCAAAACACGATGACTTTGATAGTGATTTA 53965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 102592557353340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |