Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006655.1 Length=15279 Score E Sequences producing significant alignments: (Bits) Value seq4229 1115 0.0 seq15089 572 2e-159 >seq4229 Length=44698 Score = 1115 bits (1236), Expect = 0.0 Identities = 977/1214 (80%), Gaps = 59/1214 (5%) Strand=Plus/Plus Query 6727 CGATCAGATATGATATGAAGGACATGTGTAAGGGACCTAAATGAAAACTTTCAACAGGTA 6786 |||| | | ||||| |||||||||||||| |||| || || ||||||| | || ||| Sbjct 32110 CGATTACACATGATGCGAAGGACATGTGTAGGGGA--TACATTAAAACTTACTACGGGTG 32167 Query 6787 TCAC-AGTATAGTAGTCTTATTTAATAAACTTTTAAAGAACTCTGAGTTTTTAAGAGTCG 6845 | || |||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 32168 TTACGAGTATAGTAGCTTTATTTAATAAACTTT-AAAGAACTCTGAGTTTTTAAGAGTCG 32226 Query 6846 AATATAGTAAATTTAAAAAATGCGATGAAA--AGATATACTTCCACGGAAAATCGAGCGA 6903 |||||||| ||||| || | | | |||||| | ||| || | || ||||||| | Sbjct 32227 AATATAGTTAATTTGAACAGTACAATGAAATAAAATAGACGTGCA--GAAAATCCATTAT 32284 Query 6904 ACGAACTTATTTGTCCGTTAGGTTCGGTGTGCTTGTTTGCATAGGCTTCTCTTTCCCCAT 6963 || |||| |||||| ||| ||| |||||||||||| |||||| | |||| | ||| || Sbjct 32285 ACAAACTCATTTGTTTGTTGGGTACGGTGTGCTTGTCTGCATATGTTTCTTTCTCCTTAT 32344 Query 6964 TATGTGGTGTCGTACTTTCTATATGTGAGCTTGAGTCAGAATCATAATTGGTAGATGATG 7023 ||| | ||||| || ||||||||||||| ||||| ||||||||| |||||| || Sbjct 32345 TATATAGTGTCTTATTTTCTATATGTGATCTTGA------ATCATAATTAGTAGATACTG 32398 Query 7024 AATTTCCTTGACTGTCGGATGTATTCTGCTCCACAGAACCACCTTGGCTCTTTGTGTTAT 7083 |||||||||||||||| | || ||||||||| || | ||||| || |||||||| Sbjct 32399 AATTTCCTTGACTGTCAGTTGCATTCTGCTCAGCAATGTCTAATTGGCCCTCTGTGTTAT 32458 Query 7084 TTTTTGTATTCATTCCAGCTTCTGAGTCATTGCTAGAGGGATAAAAGTTTCCGCTTTGAT 7143 ||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||||| Sbjct 32459 TTTTTGTGTTCATTCCAGCTTCTGAGTCATTGCTAGAGGGAAAGAAGTTTCCTCTTTGAT 32518 Query 7144 AGATGATTGGCTTCAATGCGTCTGTGTTATTTTCTATCGATTTCGGATAAGTATTGTTAA 7203 ||||| |||||||||||| ||| |||||||||||||||| ||||||||| |||||||| Sbjct 32519 GGATGACTGGCTTCAATGCTTCTTTGTTATTTTCTATCGAATTCGGATAATTATTGTTAG 32578 Query 7204 ATTGATTAATATTAATTGCAAACGAGGTTTTATTTCCGGGATTTACTGGGTAGGTATTAC 7263 ||||||| ||| |||||||| | ||||||||||| |||||| ||| |||||| ||| Sbjct 32579 ATTGATTGATACTAATTGCATGCAAGGTTTTATTTTTTGGATTTTCTGAGTAGGTGTTAT 32638 Query 7264 CATTCTGAACGACTACACCAGTATAGATATCATTTTTCCCAGGATGCTCAGGATATCTGT 7323 |||||||||||||||||||| | ||||||||||||||| |||||| || || ||| ||| Sbjct 32639 CATTCTGAACGACTACACCACTGTAGATATCATTTTTCGCAGGATTCTTAGAATAATTGT 32698 Query 7324 TACCAATTTGCGTAATACTAGCTCCGTATTGAGCATTTTCATTCTTTCCTTGATAAGTAT 7383 ||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 32699 TACCAATTTGCGTGACACTAGCTCCATATTGAGCATTTTTATTCTTTCCTTGATAAGTAT 32758 Query 7384 TATTCTCTTGTACGAGAATAGGTCCATACACATTCGTTCCATTAGGATTGTCAGGAAAA- 7442 ||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||| Sbjct 32759 TATTCTCCTGTACGAGAATAGGTCCATACACATTCGTTACATTAGAATTGTCAGAAAAAA 32818 Query 7443 --GTATTGCCAATTTGCACGTCTTGGGATCCATATACGATGTTTTTTCCGTCACTTTCGG 7500 |||||||||||||||||||| ||||||||||| | | |||| | ||| |||||| Sbjct 32819 ACGTATTGCCAATTTGCACGTCAACGGATCCATATAAAACGGGTTTTTCATCATTTTCGG 32878 Query 7501 ---AAAAAGTGATGTCTTTTTGGTTAACTCGGGAAGCAAAATAATTTACTTGTCCAGTCC 7557 | || | ||| | |||| ||||||| | |||||||| | |||||||||| Sbjct 32879 CATTATAAACGTTGTTTCTTTGAAAGGTTCGGGAACCTAAATAATTGAATTGTCCAGTCT 32938 Query 7558 TGTTCGAAGGAGCATCAAAGGAACTGAATTTTTTGTCAAGAC-CTTCCT----------- 7605 ||||||| |||||||||||| | || | || ||| | | |||| | Sbjct 32939 TGTTCGATGGAGCATCAAAGATTTTCAAACTGTTCTCATGGCTCTTCATATTGAAAACAG 32998 Query 7606 GAAAATT---ATCAAATTTCGGCAA------------GTCTCGTCGCAGCCTATTACCTC 7650 |||| || ||| ||||| || || |||||||||||||||||| | Sbjct 32999 GAAACTTGAACTCACGGTTCGGTAACATATAAATCGTGTTTCGTCGCAGCCTATTACCGC 33058 Query 7651 TTTGTGATTTATCTGCAAGATTTGTCTGCTCTAAGTATGATTCTGGCACAATGTTGAGAG 7710 |||||||| |||||||||||| |||||||||||| |||||||| ||| Sbjct 33059 TTTGTGAT------------TTTGTCTGCTCTTCGTATGATTCTGGAACAATGTTACGAG 33106 Query 7711 TTTCTCTTTTCTGTACCTTTAGAGCTTCAATTACACTATTGCTTTTATAGACGGGTCTCT 7770 | | | |||||||||||||||| |||||||||||||||| ||||||||| |||||| ||| Sbjct 33107 TGTTTTTTTTCTGTACCTTTAGGGCTTCAATTACACTATCGCTTTTATACACGGGTGTCT 33166 Query 7771 GCATTCCATTGTGTTGCGCTTTTCGTTCTTCTTGCTCCTCTGCTTGTATCCCTTTAACAA 7830 || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33167 GCGTTCCATTGAATGGCGCTTTTCGTTCTTCTTGCTCCTCTGCTTGTATCCCTTTAACAA 33226 Query 7831 Gaaaaaatataaattagattttttagaaacaaaaatggactaaaatttcggaaaacaaac 7890 ||||||||||||||||||||||||||| |||||| |||| |||| |||| ||||||||| Sbjct 33227 AAAAAAATATAAATTAGATTTTTTAGAAGCAAAAAAGGACCAAAAGTTCGTAAAACAAAC 33286 Query 7891 aatATAAAGTACTT 7904 ||| | |||||||| Sbjct 33287 AATCTTAAGTACTT 33300 Score = 161 bits (178), Expect = 1e-35 Identities = 167/215 (78%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 6515 GTCATGTTGCTAAAATATGTGAATTTTAAGGATTA--CTCAGTAGGTATCACACAGTTTG 6572 |||||||||| ||| || | |||||||||| | | |||||||||||||||||| |||| Sbjct 32046 GTCATGTTGCCGAAACATATAAATTTTAAGGTTGAGTCTCAGTAGGTATCACACACTTTG 32105 Query 6573 TTTGCAATTACATATGATACGGAGGACATGTGTAGAGGATAAATGAAAACTTTCAACGGG 6632 ||||| |||||| ||||| || ||||||||||||| ||||| || ||||||| | ||||| Sbjct 32106 TTTGCGATTACACATGATGCGAAGGACATGTGTAGGGGATACATTAAAACTTACTACGGG 32165 Query 6633 T-ATAATAATATAGCTGCTATATTTAATAGACTTTTGAATAACTTATACTGTATAATACT 6691 | || | ||||| ||| ||||||||| || ||| || |||| | | | ||| | | Sbjct 32166 TGTTACGAGTATAGTAGCTTTATTTAATAAAC-TTTAAAGAACTCTGAGTTTTTAAGAGT 32224 Query 6692 AGAATAGAGAATATTTGAGCAATATAATGAAAGAA 6726 ||||| || |||||| || || ||||||| || Sbjct 32225 CGAATATAGTTAATTTGAACAGTACAATGAAATAA 32259 >seq15089 Length=5108 Score = 572 bits (634), Expect = 2e-159 Identities = 484/598 (81%), Gaps = 14/598 (2%) Strand=Plus/Minus Query 7729 TTAGAGCTTCAATTACACTATTGCTTTTATAGACGGGTCTCTGCATTCCATTGTGTTGCG 7788 ||||||| | ||||||||||| |||||| | ||||||||||||||| ||||| ||||| Sbjct 2910 TTAGAGCGTTAATTACACTATCACTTTTAAACACGGGTCTCTGCATTTCATTGAATTGCG 2851 Query 7789 CTTTTCGTTCTTCTTGCTCCTCTGCTTGTATCCCTTTAACAAGaaaaaatataaattaga 7848 ||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 2850 CTTTTCGTTCTTCCTGCCCCTTTGCTTGTATCCCTTTAACAAAAAAAAATATAAATTAGA 2791 Query 7849 ttttttagaaacaaaaatggactaaaatttcggaaaacaaacaatATAAAGTACTTACTC 7908 ||||| |||| |||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 2790 TTTTTAAGAAGCAAAAAAGGACCAAAGTTTCGGAAAACAAACAATATAAAGTACTTACTC 2731 Query 7909 GGAATAACATTACTAACAACGAGTAACGTTGCTACAGTGATGGACAACATGCCGGCTACA 7968 | ||||||||| ||| || || |||||| || ||| ||||||| |||| |||||||| Sbjct 2730 GAAATAACATTGCTAGTAATAAGCAACGTTAGTATAGTAATGGACACCATGTCGGCTACA 2671 Query 7969 GTGTTCGTTCAATACTGCGGTCCTTCCGTGCCAGCGCCGCTTTTTATAGGGGCAACTCGT 8028 ||| | || ||||| ||| || |||||||||||||||||||||||| ||||| |||| Sbjct 2670 ATGTGCTTTTGATACTACGGCCCCTCCGTGCCAGCGCCGCTTTTTATATGGGCAGCTCGC 2611 Query 8029 GCGTCATGCGCATGCGATAACAGTCCACAGACTGTTTTATGGAACTAACAGTAAAATAAA 8088 ||||||||||||| ||||||| || |||||||||| | |||| || || |||| || Sbjct 2610 ACGTCATGCGCATGTGATAACACCCCGCAGACTGTTTCAAGGAATTACCAAAAAAAAAAT 2551 Query 8089 TTAATTTAATGATTCATCATCCTAAATGCGTGTTGATAATTATACAGCAATTTCGCGTGA 8148 ||| ||||||||||||| ||| ||| ||||||||||||||||| |||||| | |||| Sbjct 2550 TTAGTTTAATGATTCATTATCTTAATTGCGTGTTGATAATTATGCAGCAAAGCTGTGTGA 2491 Query 8149 TTTGTTTACGCCCCCACGACTCACACAAAAATTCAATCATAATAATTGATATCACGTGAT 8208 || ||||| |||||| || ||||||||||||| | ||||| | | Sbjct 2490 CTT--------------GACTCTCACAAATATGTAATCATAATAATTAACATCACATAAA 2445 Query 8209 CCGATACTGCGCAGTAATTAGTCATTAACCTTGAATTTCACTGGTCTTTGGTTTGGCATA 8268 |||| | | |||| || ||| || ||||| ||| || ||| ||||||||||| | | Sbjct 2444 CCGACAAAGAGCAGCAAGTAGGATTTGACCTTAAATACCATTGGCCTTTGGTTTGGTACA 2385 Query 8269 AATGTACCGAATAACAACAGGGAAATACCTACTGGTAGTTATCATTCGAACATGCGTT 8326 ||||| |||||||||||| ||||||||||||||||| |||||||||| |||| || Sbjct 2384 GATGTAACGAATAACAACATTCAAATACCTACTGGTAGTCATCATTCGAAAATGCTTT 2327 Score = 192 bits (212), Expect = 6e-45 Identities = 181/225 (80%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 6734 ATATGATATGAAGGACATGTGTAAGGGACCTAAATGAAAACTTTCAACAGGTATCACAGT 6793 ||||||| |||||||||| ||| |||| || ||||||||||| || ||| | | ||| Sbjct 3469 ATATGATGCGAAGGACATGAGTAGGGGAAATA--TGAAAACTTTCTACGGGTGTTAGAGT 3412 Query 6794 ATAGTAGTCTTATTTAATAAACTTTTAAAGAACTCTGAGTTTTTAAGAGTCGAATATAGT 6853 ||||||| ||||||||||| |||| ||||||||||||| ||| |||||||||||||||| Sbjct 3411 ATAGTAGCTTTATTTAATAAGCTTT-AAAGAACTCTGAGATTTCAAGAGTCGAATATAGT 3353 Query 6854 AAATTTAAAAAATGCGATGAAA-AG-ATATACTTCCACGGAAAATCGAGCGAACGAACTT 6911 ||||| || ||| | |||||| || ||| |||| || ||||||| | || |||| Sbjct 3352 TAATTTGAACAATACAATGAAATAGTATAGACTTGCA--GAAAATCCATGATACAAACTA 3295 Query 6912 ATTTGTCCGTTAGGTTCGGTGTGCTTGTTTGCATAGGCTTCTCTT 6956 |||||| ||| ||| |||||||||||| |||||| |||||| || Sbjct 3294 ATTTGTTTGTTGGGTACGGTGTGCTTGTCTGCATATGCTTCTTTT 3250 Score = 167 bits (184), Expect = 2e-37 Identities = 203/270 (75%), Gaps = 25/270 (9%) Strand=Plus/Minus Query 7139 TTGATAGATGATTGGCTTCAATGCGTCTGTGTTATTTTCTATCGATTTCGGATAAGTATT 7198 ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 3235 TTGATGGATGACTGGCTTCAATGCGTCTTTGTTATTTTCTATCCATTTCGGATAAATATT 3176 Query 7199 GTTAAATTGAT-----TAATATTAATTGCAAACGAGGTTTTATTTCCGGGATTTACTGGG 7253 ||| |||||| || || ||||||||| | | |||||||| | | ||||| ||| | Sbjct 3175 TTTAGATTGATTGCTATAGTAATAATTGCAAGCAAAGTTTTATTCCTGTGATTTTCTGAG 3116 Query 7254 ----TAG-GTA----TTACCATTCTGAACG--ACTA-CACCAGTATAGA----TATCATT 7297 ||| ||| |||||| | || | |||| | ||| ||| || | | ||| Sbjct 3115 TGATTAGAGTAATTGTTACCAATTTGCGTGACACTAGCTCCA-TATTGAACATTTTTATT 3057 Query 7298 TTTCCCAGGATGCTCAGGATATCTGTTACCAATTTGCGTAATACTAGCTCCGTATTGAGC 7357 || || || | || ||| |||||||||| ||||| | ||||||||| |||||| | Sbjct 3056 CTTTCC---TTGATAAGAATAATTGTTACCAATATGCGTGACACTAGCTCCATATTGAAC 3000 Query 7358 ATTTTCATTCTTTCCTTGATAAGTATTATT 7387 ||||| ||||||||||||||||| || ||| Sbjct 2999 ATTTTTATTCTTTCCTTGATAAGAATAATT 2970 Score = 154 bits (170), Expect = 1e-33 Identities = 162/211 (77%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 6515 GTCATGTTGCTAAAATATGTGAATTTTAAGGATTA--CTCAGTAGGTATCACACAGTTTG 6572 |||||||| | ||| || | |||||||||| | | |||||||||||||||||| |||| Sbjct 3540 GTCATGTTACCGAAACATATAAATTTTAAGGTTGAGTCTCAGTAGGTATCACACACTTTG 3481 Query 6573 TTTGCAATTACATATGATACGGAGGACATGTGTAGAGGATAAATGAAAACTTTCAACGGG 6632 ||||| ||||||||||| || |||||||| |||| ||| | |||||||||||| ||||| Sbjct 3480 TTTGCGGTTACATATGATGCGAAGGACATGAGTAGGGGAAATATGAAAACTTTCTACGGG 3421 Query 6633 TATAATAATATAGCTGCTATATTTAATAGACTTTTGAATAACTTATACTGTATAATACTA 6692 | | | | ||||| ||| ||||||||| | ||| || |||| | | || | | Sbjct 3420 TGTTAGAGTATAGTAGCTTTATTTAATA-AGCTTTAAAGAACTCTGAGATTTCAAGAGTC 3362 Query 6693 GAATAGAGAATATTTGAGCAATATAATGAAA 6723 ||||| || |||||| ||||| ||||||| Sbjct 3361 GAATATAGTTAATTTGAACAATACAATGAAA 3331 Score = 80.6 bits (88), Expect = 3e-11 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 9742 AATTGAGTTTAAAAAATATATTTATTTGTTCGTTAAAATACAAAACTTTTTACAGTA 9798 ||||||||||||||||||||||| |||||||| | |||||||||||| |||||||| Sbjct 1913 AATTGAGTTTAAAAAATATATTTTCTTGTTCGTCAGAATACAAAACTTCTTACAGTA 1857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48759849422846