Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq3901 316 5e-82 seq75 311 2e-80 seq8942 309 8e-80 seq2748 306 1e-78 seq7012 271 2e-68 seq9514 132 1e-26 >seq3901 Length=45253 Score = 316 bits (350), Expect = 5e-82 Identities = 279/344 (81%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| |||||||| |||| || | ||||||||||| || ||| | | | Sbjct 12653 GGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGC-CTTTGCTTGA 12595 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | |||||| | ||||||||||||||| ||| |||| Sbjct 12594 A-AAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGATATC 12536 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| |||||||| |||||||||||| |||||||||||||| ||||||| Sbjct 12535 GTGAACGAAAGAAACCCGAAAAA-GTGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 12477 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 ||||| | || | || || | | |||||| | | | || ||||| ||||| | ||||| Sbjct 12476 ATCAATTAAAATTGCAAAATATCTCATGAGGATGATACAACTGCGTCGAATGCCGCCAAC 12417 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || ||||||||||||| |||||||||||||| ||||||||| Sbjct 12416 CGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGT 12357 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 12356 GTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 12313 >seq75 Length=298925 Score = 311 bits (344), Expect = 2e-80 Identities = 277/344 (81%), Gaps = 2/344 (1%) Strand=Plus/Minus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| |||||||| |||| || | ||||||||||| || || | || Sbjct 261871 GGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGCTTG 261812 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | |||||| | ||||||||||||||| ||| |||| Sbjct 261811 AAAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGATATC 261752 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct 261751 GTGAACGAAAGAAACCCG-AAAAAGTGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 261693 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 ||||| | || | || || |||||||| | | | || ||||| ||||| | ||||| Sbjct 261692 ATCAATTAAAATTGCAAAATAACTTATGAGGATGATACAACTGCGTCGAATGCCGCCAAC 261633 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || | ||||||||||| |||||||||||||| ||||||||| Sbjct 261632 CGCGTGAAAATTGGTTGATCCA-TCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGT 261574 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 261573 GTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 261530 >seq8942 Length=39774 Score = 309 bits (342), Expect = 8e-80 Identities = 278/345 (81%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 ||||| |||||||| |||||||| |||| || | ||||||||||| || || | || Sbjct 3290 GGAATTACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGCTTG 3349 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | ||||| | ||||||||||||||| ||| |||| Sbjct 3350 AAAAACCACGTCGATCGCCACCAAGCTAGTCAAAAGCGGTTGATTCGTTCGAGAGATATC 3409 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 3410 GTGAACGAAAGAAACCCGAAAAAA-TGTTTTTTCGGGATTACTCCGAAATTTGTGGTTCG 3468 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 ||||| | || | || || |||||||| | | | || ||||| ||||| | ||||| Sbjct 3469 ATCAATTAAAATTGCAAAATAACTTATGAGGATGATACAACTGCGTCGAATGCCGCCAAC 3528 Query 40370 CGCGT-AAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAG 40428 ||||| |||| ||||| || ||||||||||||| |||||||||||||| |||||||| Sbjct 3529 CGCGTGAAAATTCGTT-GATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAG 3587 Query 40429 TGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 |||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 3588 TGTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 3632 >seq2748 Length=62016 Score = 306 bits (338), Expect = 1e-78 Identities = 275/344 (80%), Gaps = 1/344 (0%) Strand=Plus/Plus Query 40130 GGAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTA 40189 |||||||||||||| |||||||| |||| || | |||||||||||| || || || Sbjct 26770 GGAATAACTTTTAACCGGCTTTATCGATCAACTTCAAAAACTAATTCGCCTTTGGGCTTG 26829 Query 40190 ATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATC 40249 | ||||||||||||| || || | ||| || | ||||||||||||||| ||| |||| Sbjct 26830 AAAAACCACGTCGATCGCCACCAAGCTGGTGAAAAGCGGTTGATTCGTTCGAGAGATATC 26889 Query 40250 GTTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATTACTCCGAAATTCGTGGTTCA 40309 || |||||||||| ||||||| ||||||||||||| |||||| ||||||| |||||| Sbjct 26890 GTGAACGAAAGAAACCCGAAAA-AGTGTTTTTTCGGGATTACTACGAAATTTGTGGTTTG 26948 Query 40310 ATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAATGTCACCAAC 40369 ||||| | || | || || |||||||| | | | || ||||| ||||| | ||||| Sbjct 26949 ATCAATTAAAATTGCAAAATAACTTATGAGGATGATACAACTGCGTCGAATGCCGCCAAC 27008 Query 40370 CGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTTAAAAAATAGT 40429 ||||| ||||| | | || ||||||||||||| |||||||||||||| ||||||||| Sbjct 27009 CGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTCCAAAAATAGT 27068 Query 40430 GTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 ||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 27069 GTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 27112 >seq7012 Length=26895 Score = 271 bits (300), Expect = 2e-68 Identities = 272/354 (77%), Gaps = 12/354 (3%) Strand=Plus/Plus Query 40131 GAATAACTTTTAAACGGCTTTACCGATTAATTCCAAAAACTAATTAGCTCTTAACATTAA 40190 ||||||||||||| | |||||| |||| || | ||||||||||| || || | |||| Sbjct 20070 GAATAACTTTTAACCAGCTTTATCGATCAACTTCAAAAACTAATCCGCCTTTGAGCTTAA 20129 Query 40191 TAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTATCG 40250 ||||||||||||| || || | |||||| | ||||||||||||||| ||| |||| Sbjct 20130 AAAACCACGTCGATCGCCACCAAGCTGGTCAAAAGCGGTTGATTCGTTCGAGAGATATCA 20189 Query 40251 TTGACGAAAGAAAACCGAAAAAAGTGTTTTTTCGGAATT-----------ACTCCGAAAT 40299 | |||||||||| | |||||| || ||||| ||||||| |||| ||||| Sbjct 20190 TGAACGAAAGAAACCAGAAAAA-GTATTTTTCCGGAATTTCAGAGTAATCACTCTGAAAT 20248 Query 40300 TCGTGGTTCAATCAAATTGAACTTAAAGATTTTTTATGAGGCTTAAAAAATTGCGTTGAA 40359 | |||||| ||||| | || | || || |||||||| | | | || ||||| ||| Sbjct 20249 TTGTGGTTTGATCAATTAAAATTGCAAAATAACTTATGAGGATGATACAACTGCGTCGAA 20308 Query 40360 TGTCACCAACCGCGTAAAAATCGTTCCATTTATTCAAAAGTTATCGCGGTTTGAAAATTT 40419 || | |||||||||| ||||| | | || ||||||||||||| |||||||||||||| Sbjct 20309 TGCCGCCAACCGCGTGAAAATTGGTTGATCCATTCAAAAGTTATTGCGGTTTGAAAATTC 20368 Query 40420 AAAAAATAGTGTTGTATCAAACTTCTATCAGACTTTTGAGCTCGAAGAGCTAAA 40473 |||||||||||| ||| |||||||||||||||||| ||||| | |||||| || Sbjct 20369 CAAAAATAGTGTTCTATGAAACTTCTATCAGACTTTCGAGCTGGGAGAGCTCAA 20422 >seq9514 Length=16118 Score = 132 bits (146), Expect = 1e-26 Identities = 131/167 (78%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 17715 acaca--cacacaAACATAGTGATAATATCGCGGCAGTAGTCACGGAAGCTTCCTATGAT 17772 ||||| |||||| ||||| || | |||| | | |||||| ||||||||||| || Sbjct 14302 ACACATCCACACAGACATACAGACACCATCGTGAAAATAGTCAGAGAAGCTTCCTAGGAC 14361 Query 17773 CTTAAAACGTCGAGATCTGATGTAAACTCGATTTTTGTTAAACGGGGTAAAACCAATAAC 17832 || ||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||| Sbjct 14362 CTCAAAACGTTGAGATCTAATGAGAACTCGATTTTCAGAAAACGGGGTAAAACCAATAAC 14421 Query 17833 TTCCCGATTTTCGAAAATCTTCAAtttttttAGCGGGAAGGTAAAAA 17879 ||||| ||||| | || | |||||||||||||||| |||||| Sbjct 14422 TTCCCTATTTT-TTTTTTGTTTATTTTTTTTAGCGGGAAGTTAAAAA 14467 Score = 123 bits (136), Expect = 7e-24 Identities = 118/150 (79%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 39724 TTTTTAACTTCCCGCTAAGAAAATCGGAGATCTTCAAAAATCGGGAAGTTATTGGTTTTA 39783 |||||||||||||||||| |||| | | |||||| |||||||||||||||||| Sbjct 14467 TTTTTAACTTCCCGCTAAAAAAAATAAACAAAAA-AAAAATAGGGAAGTTATTGGTTTTA 14409 Query 39784 CCCCCTTTTGTAAAAATTGATTTTTCACTAGATCTCGACGTTTCAAGGTCTCAGGAAGCT 39843 |||| |||| | ||||| || || ||| |||||||| |||||| ||||| |||||||| Sbjct 14408 CCCCGTTTTCTGAAAATCGAGTTCTCATTAGATCTCAACGTTTTGAGGTCCTAGGAAGCT 14349 Query 39844 TCTTTGACCACCCCCGTGATGGTGTCTGTA 39873 ||| |||| | | ||||||||||||| Sbjct 14348 TCTCTGACTATTTTCACGATGGTGTCTGTA 14319 Score = 95.1 bits (104), Expect = 3e-15 Identities = 110/146 (75%), Gaps = 7/146 (5%) Strand=Plus/Minus Query 40131 GAATAACTTTTAAACGGCTTT---ACCGATTAATTCCAAAAACTAATTAGCTCTTAACAT 40187 ||||||||||| |||| | |||||| ||||||| || ||| |||||||||| | Sbjct 14102 GAATAACTTTTT---GGCTATTACACCGATCAATTCCATAACTCAATCAGCTCTTAACCT 14046 Query 40188 TAATAAACCACGTCGATTGCTGTCAGCCCGGTCAACATCGGTTGATTCGTTCGTGAGTTA 40247 || ||| ||||||||||| || | || ||||||| ||||||||||||| || Sbjct 14045 CAAAAAATGACGTCGATTGCCGTTTCGAAAATGAAAATCGGTTAATTCGTTCGTGAGATA 13986 Query 40248 TCGTTGACGAAAGAAAACCGAAAAAA 40273 |||| ||||||| ||| |||||||| Sbjct 13985 TCGTGAACGAAAG-AAATCGAAAAAA 13961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132871277507670