Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq955 284 2e-71 seq4 113 6e-20 seq137 87.8 2e-12 >seq955 Length=106330 Score = 284 bits (314), Expect = 2e-71 Identities = 1131/1764 (64%), Gaps = 26/1764 (1%) Strand=Plus/Minus Query 61995 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62053 |||||||| || | | || | || |||||||| | || || ||||| || ||||| | Sbjct 60339 GTGAATTGGATCGCGTTCGCA-GCCGGTTTCGTCCTCAGGTAATACATGCCAGTTTTCAA 60281 Query 62054 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 62113 ||| | ||||| ||| ||| || || |||| ||| ||| | || || || | Sbjct 60280 ACCCATTTTCCATGCGTGAAAGTGAATTGATGTTAATTTACCATAGTTGGGTTCAGCCAC 60221 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 ||| || || | || || || || || || || || || | || || ||||| | || Sbjct 60220 ATGAATGTTGAATGACTGGCTCTGGTCTATAAAAGCCCCTCGATCAGCTGCCATCTGAAT 60161 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62232 | ||||||| || ||| ||||| | || || || || || |||| | |||| |||| Sbjct 60160 GCTCGTCTTGACTGAAATCTCCCAGACTGTCTTGTACAATTCTCTTATT-TCTTTGGGAA 60102 Query 62233 G-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 | || |||| || | |||||| | || || || || || || |||| Sbjct 60101 TAGCTTCAATATTTTGGACAGATCCATTGTTGTGAATGATTAGGTTTTTCATATCTTCAT 60042 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 ||| || | |||||| | | ||| || ||||| | || || || || || || | Sbjct 60041 CCCACAAGTCCGCCTCGGTCAGATCTCGCAGCAGATGATGGTTCACGACCTGGAACTCGC 59982 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 | |||| || || || ||| || ||| ||| | || || | ||||| ||||| | Sbjct 59981 CCGACAGGACCCTGCGCTGGTAGATGTTAGACGTAAAAGGCTCGAAGGACTCGTTATTGC 59922 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | | ||||| || || || || || ||||| ||||| | || | |||| |||| Sbjct 59921 CGAGGATTTGTGCGGTGGAGGCGGTGGGCATCGGTGCTAATAAGAGCGAGTTTCGGAGAC 59862 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | | | | |||||| ||||| |||| |||| | ||| || || | || Sbjct 59861 CATGTTTAGCGATTTTTTCTTTGAGAGCACCCCAGTCCCATAGGTCTGTGGGCGTTTTGT 59802 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTAT 62588 ||| | || || | || | | || | || || || || || Sbjct 59801 TCCACATGTCGTATTGCAAGATGCCCTGGCTCACCGGAC-AGCCCGGGTAAGTTTCATAA 59743 Query 62589 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 62648 || |||||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 59742 ACGCCAATTTTCTCAGCGAGCTCGCAGCTTGCTTCTAACGCACCATAGTAAATGGTTTCG 59683 Query 62649 AAGATCTTCTTATTTAGATCTTG--TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 62706 || |||| | ||| | |||| ||| | || ||| | || | | || | Sbjct 59682 AAAATCTGTTGATTCAA--CTTGATTGCAGCTTCACTTTCATACGGGATACGCATCAGGA 59625 Query 62707 TAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62766 || || || || |||||||||||||| || ||||| || | ||| | | | || ||| Sbjct 59624 CGAAAGCATCGGCCAATCCTTGAACACCGATTCCGATCGGCCGATGCCGCATGTTTGAGT 59565 Query 62767 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG-ACA 62825 | | |||||||| || || || | || | ||||| ||||| || ||||| ||| || Sbjct 59564 TCTTGGCTTCTGGGATCGGGTAGAAGTTCACCTCTATGATTTTGTTTAGATT-CTGCACG 59506 Query 62826 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAAC 62882 | | ||| || || || || || ||| | | | | |||| | || || Sbjct 59505 ACGATTTTAGTGACTTCTTTTAGCTTCTCAAAGTTATACGTTTTGTCATCATTGACGAAT 59446 Query 62883 ATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGT 62942 |||||| || || || |||| |||||| ||||| || |||| | || || | Sbjct 59445 CTGTTCAGTGCGACGGACGCCAAATTACACACGGCAACTTCATCCGGCGACGTGTACTCA 59386 Query 62943 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63002 | ||||| ||||| |||||||| || |||||||| || | || | |||||| || || Sbjct 59385 ACGATCTCCGTGCAGAGATTACTGCATTTGATAGTGCCCAGGTTCTTTTGATTGCTTTTA 59326 Query 63003 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63062 |||| || || || || ||||| ||| |||| || || ||||| | || | ||| || Sbjct 59325 CTGTTGCATGCGTCTTTGTAAAGCATGTATGGGGTCCCGGTTTCGACTTGCGCTTCAATG 59266 Query 63063 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGT 63120 || || ||||| | ||| | || | | | | | || || |||||||| || | Sbjct 59265 ATAGCCTTCCACAAAACTTGCGCTCTCACTT--GCCTCACATATCGTTTCTCTTGTTCAT 59208 Query 63121 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 63180 || | ||| || ||||||||||| ||||| | | ||| || ||||| || | Sbjct 59207 ATCGCTCATATAACTTCTCGAACTCGTCCCCCCAGCAGTCGGCCAGGCCGGGACAGTCGT 59148 Query 63181 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63240 || ||||| | ||| || |||| || |||| |||||| || | || || | Sbjct 59147 GGGGGCACATGAGGCTCCATTCGCCGTTGCTCTCGACTCTTTTCATGAACAAGTCTGGTA 59088 Query 63241 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 |||| || | ||| || ||||| | | | |||||| || || || || || || | Sbjct 59087 TCCAGAGCCCATAAAAAAGCTCTCTTGCGCGAACTTCCTCCTTCCCAGTGTTTTTCTTGA 59028 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 |||| | |||| | | ||||| | |||||||| || | ||| | || | | || | Sbjct 59027 GATCCAAGAACTCAAATATATCCGCGTGCCACGGCTCGAGGTAGACCGCGAAGGCGCCGG 58968 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | |||||||| || || || || | ||| ||||| ||||| ||||| || | | ||| | Sbjct 58967 GTCGTTTGTTCCCGCCTTGGTCGACGTACCTAGCTGTGTTGTTATAGACGCGGAGCATGG 58908 Query 63421 GAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT-- 63478 | | | ||||| || | || ||||| |||| ||| ||| ||| |||| || || Sbjct 58907 GTACGAGGCCGTTGGAGACGCCGTTGGTTCCGGCGATGTAGGATCCCTTGGCGCGGATGC 58848 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 | | || ||| | || || || || || ||| ||||| | ||||| |||| | Sbjct 58847 AGT-GTACGTGA-ACGCCGATACCGCCCGCTGATTTGGAGATGAGCGCGCAATGTTTGAG 58790 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 |||||| ||||| ||||| ||||| || || ||||| | || || ||| || | Sbjct 58789 CGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGATGAGGAAGCAGGAGGAGAG 58730 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 ||| | || || |||| || | || || |||||||| || | || || Sbjct 58729 CTGGGGGCGGGGCGTGGCCGCCGAGAACAGCGTGGGGCTCGCGTGCGTGAAGTACTTCTC 58670 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63718 || || || |||||||| | ||||| ||||| || ||| ||||| || | | Sbjct 58669 TGACAGCAGGTTGTACGTGTTGATAGCGGAGTCGATGTCCTCGCCGTGAATGCCGATGGA 58610 Query 63719 GACACGCATTAACATGTGCTGAGG 63742 || ||||| | ||||||||| || Sbjct 58609 AACTCGCATCAGCATGTGCTGGGG 58586 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 63964 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 64023 ||||||| || |||||||| | || |||| ||| | |||||| ||||||||||| || | Sbjct 55892 GTTTTTTAGTCTCCTTGTGCAAGTTGGATATGGCGAGTCTGGCTGCTAGAATGGCGTAGT 55833 Query 64024 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64083 ||||||| | || || || || ||| | || || |||| | ||||||||||| | Sbjct 55832 CCGGATGGTTGGTGGTCATCGTAGCCGCTGTCTCCGCAGCCAAGTTATCCAATTCTACGG 55773 Query 64084 TTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64119 | || |||||| |||||| || || ||||||| Sbjct 55772 TGGTGACTCCAGAATATATGCCGCTGATTACCTTCA 55737 >seq4 Length=362500 Score = 113 bits (124), Expect = 6e-20 Identities = 255/383 (67%), Gaps = 3/383 (1%) Strand=Plus/Minus Query 156549 ATTTCTGTTATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAG 156608 || ||| ||||||| ||| || || ||||| || ||| | || | || || | | | Sbjct 26029 ATATCTCTTATGACACCAGTTCTACCGATGTTGGCTGAAGCCTGCAAATCCGTTGAAATG 25970 Query 156609 GCGTTTAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTA 156668 || | ||||||| |||| |||||||| ||||| ||||||| ||||||||| | || Sbjct 25969 GCAATGAAAAAATGTCCAAATGGAATGTTCTCGGAAATCAAATATGATGGTGAACGTGTG 25910 Query 156669 CAAGTTCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTC 156728 |||||||||||||| | ||||||| | || || | |||||||| | Sbjct 25909 CAAGTTCATAAAAAGGGGAGCGAGTTTAAATATTTCTCCCGAGCTTTAAAACCAGTTATG 25850 Query 156729 TCTCATAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCT 156788 | |||||||| | || | || || | | |||| |||| ||| |||| | | | Sbjct 25849 CCGCATAAAGTTAGTCATTTTAAGGATTTCTTACCTCAAGCGTTTCCTAAAGGTGTGGAT 25790 Query 156789 ATCGTATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATG---TACCGCTCCCGTTT 156845 || | |||||| |||| || | | || || | ||| | ||| || |||||| Sbjct 25789 ATGATTTTGGATGCTGAGGTTTTAATGGTTGATGTGAATACGGGGAAACCACTACCGTTT 25730 Query 156846 GGAAGTTTAGGAATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTG 156905 || | ||||| || ||||| ||| |||| |||| || | | ||| ||| ||| Sbjct 25729 GGTACATTAGGTATTCACAAGAAGTCCGAATTTAAAGGAGCTCAAGTATGTCTGTATGTG 25670 Query 156906 TTTGACTGTTTGTACTTTGATGG 156928 |||||||| ||||| | | |||| Sbjct 25669 TTTGACTGCTTGTATTATAATGG 25647 >seq137 Length=194913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 ||||||||||| | ||| ||||| || || || | || || || || ||||| ||| Sbjct 27394 TAAGTATCGATGAGCAGAGAGTACATCTCTGAGTGTACATTCTCCATTGCAATCTGGAAT 27453 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 || ||||| ||||| || || || | ||| |||||| | | |||| ||| |||| || Sbjct 27454 CCATAGAAGCATCTTGCTTCAGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAGTTC 27513 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 ||||| || || || || ||| || || || |||| || ||||| || || Sbjct 27514 TCATTGACAATGCCATCGGAGGCCGCGAAGAAAGCCAGGACGTGTTTGATGAA 27566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622746291741160