Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq137 176 5e-39 seq6949 141 1e-28 seq125 140 4e-28 seq4675 136 4e-27 seq2372 114 1e-20 seq1580 95.1 1e-14 >seq137 Length=194913 Score = 176 bits (194), Expect = 5e-39 Identities = 176/227 (78%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| |||||||| | |||||| ||||| || || || ||||||||||||||||| ||| Sbjct 27391 ATGTAAGTATCGATGAGCAGAGAGTACATCTCTGAGTGTACATTCTCCATTGCAATCTGG 27450 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| ||||| ||||| ||||| |||| ||||||||||||||| |||||||| || | Sbjct 27451 AATCCATAGAAGCATCTTGCTTCAGTGACCTGCACTTCTTGAGAGAATCTCTCCACCAAG 27510 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || |||||||| || || || ||||||| | || || || || || Sbjct 27511 TTCTCATTGACAATGCCATCGGAGGCCGCGAAGAAAGCCAGGACGTGTTTGATGAAGTGC 27570 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT-CTTTTGAAA 93587 ||| || || || ||||| || ||||||| || |||||| Sbjct 27571 CGCTCGCAGTCCTTCAGAGACTCCCAGTCTGATAGATCCTGTTGAAA 27617 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||| || || |||| ||||||||||||||| | ||| || | ||| || ||||||| Sbjct 23373 CTTCGTCACGAGAGATCATCTCATTGCTGAATGTCAGACCGGGCATCAGACCGCGTTTCT 23432 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | | ||| ||||| || || || || || || || ||||| || || |||| ||| |||| Sbjct 23433 TCATCCAGAATATAGACGCGAAGCTGCCCGAGAAGAATATGCCCTCGACGGATGCGAATG 23492 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 |||| || || ||| | || | || | || |||| |||||| | | ||||| || | Sbjct 23493 CCACGATGCGCTCGCCGAAGGTGGCCGTCTTGCTGCCGATCCACTGGAGCGCCCAGTCCG 23552 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 | || ||||| | || || || || || | ||||| |||||| Sbjct 23553 CCTTCTTCTTGACGCACGGCAGCGTCTCCACGGCGTTGAATAGG 23596 >seq6949 Length=47504 Score = 141 bits (156), Expect = 1e-28 Identities = 104/120 (87%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 126240 TCTCGAATTTTGCGCTTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATT 126299 || |||||||||| || | | ||||||||||||||||||||||||||||||||||| Sbjct 33313 TCGCGAATTTTGCCGTTGTTCGTTAAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATT 33372 Query 126300 TAAGATCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||| |||||||||| ||||||||||||||||||||||||||||||||| |||| || Sbjct 33373 TAAGCTCTGGTTCCCGAGAGGGAGCGTGGGTTCGAACCCCACACCTGACAAACTATTTTT 33432 >seq125 Length=201002 Score = 140 bits (154), Expect = 4e-28 Identities = 97/108 (90%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 175535 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 175594 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT--ATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||||| ||| |||| ||||| || Sbjct 175595 TGGGTTCGAACCCCACACCTGACAAATTCGATTTTTGGTCTTTTTTTT 175642 >seq4675 Length=41993 Score = 136 bits (150), Expect = 4e-27 Identities = 95/106 (90%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 24615 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGA 24556 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||||||||||||||||||| ||| || ||| | ||||| Sbjct 24555 GCGTGGGTTCGAACCCCACACCTGAC-AATCCTTTTTGCATTTTTT 24511 >seq2372 Length=69031 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || |||||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 27766 AGCCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGAGC 27825 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||| || Sbjct 27826 GTGGGTTCGAACCCCACACCTGGCA 27850 >seq1580 Length=85330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/121 (79%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 28771 TTGAAAAGGACATGGCAAAAA-CTACCATGTAGACGAGAACATATAATTTCTGAGAGAAC 28829 || ||||||||| |||||| || |||||||| || |||||||||||||| || | | Sbjct 53367 TTAAAAAGGACACAACAAAAAACTTCCATGTAGGCGCGAACATATAATTTCAGACATGAT 53426 Query 28830 CCAATCAACGTAATCACATGACGA-GAGAGCAAAGCCACACGATTCAATGACACATGCAT 28888 ||||||||| |||||| ||||| ||| || || ||||| | ||| || |||||||||| Sbjct 53427 CCAATCAACATAATCATGCGACGATGAG-GCGAATCCACAAGCTTCTATCACACATGCAT 53485 Query 28889 T 28889 | Sbjct 53486 T 53486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556681205431240