Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008838.1 Length=1657 Score E Sequences producing significant alignments: (Bits) Value seq6422 172 6e-40 seq9855 167 2e-38 seq2447 150 2e-33 seq1896 118 1e-23 seq171 93.3 4e-16 seq1668 84.2 2e-13 >seq6422 Length=30189 Score = 172 bits (190), Expect = 6e-40 Identities = 143/171 (84%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 1 TTCCTATAGCCTCTACTGGCTTTACC-TATAGCAATATATTTCTAGCTCTATAACTAGTC 59 ||| |||| | | || ||||| | || |||||||||| |||||||||| | || || | Sbjct 21065 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATA 21123 Query 60 CTATATATTATTTTTACCTCTTTAAGATAAATAAACTTATTTAAAGAGTTAAATATAAAA 119 |||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 21124 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 21183 Query 120 TACCACAGCCACGAGAAATCGTATAAAGCTATGGTAGGTCTAGGA-TAGAA 169 ||||||||||||| ||||| |||| |||||||||| |||||| | ||||| Sbjct 21184 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAA 21234 >seq9855 Length=15086 Score = 167 bits (184), Expect = 2e-38 Identities = 142/171 (83%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 1 TTCCTATAGCCTCTACTGGCTTTACC-TATAGCAATATATTTCTAGCTCTATAACTAGTC 59 ||| |||| | | || ||||| | || |||||||||| |||||||||| | || || Sbjct 3081 TTCATATAACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACA 3139 Query 60 CTATATATTATTTTTACCTCTTTAAGATAAATAAACTTATTTAAAGAGTTAAATATAAAA 119 |||||| ||||| ||||||||||||||| |||||||||| |||||||||| |||||||| Sbjct 3140 CTATATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAA 3199 Query 120 TACCACAGCCACGAGAAATCGTATAAAGCTATGGTAGGTCTAGGA-TAGAA 169 ||||||||||||| ||||| |||| |||||||||| |||||| | ||||| Sbjct 3200 TACCACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAA 3250 >seq2447 Length=64305 Score = 150 bits (166), Expect = 2e-33 Identities = 115/136 (85%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33 AATATATTTCTAGCTCTATAACTAGTCCTATATATTATTTTTACCTCTTTAAGATAAATA 92 |||| ||||||| || |||| ||||| |||| | ||||| ||||||||||||||| ||| Sbjct 3276 AATACATTTCTAACTATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATA 3217 Query 93 AACTTATTTAAAGAGTTAAATATAAAATACCACAGCCACGAGAAATCGTATAAAGCTATG 152 ||||||||||||||||| ||||||| ||||||||||| |||||||||||| |||||| Sbjct 3216 AACTTATTTAAAGAGTTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATA 3157 Query 153 GTAGGTCTAGGATAGA 168 | | ||||| ||||| Sbjct 3156 GCAAATCTAGAATAGA 3141 >seq1896 Length=105120 Score = 118 bits (130), Expect = 1e-23 Identities = 124/162 (77%), Gaps = 12/162 (7%) Strand=Plus/Plus Query 14 TACTGGCTTTACCTATAGCAATATATTTCTAGCTCTATAACTAGTCCTATATAT-TATTT 72 || |||| ||| |||||||||| |||| ||| ||| || ||||| ||||| ||||| Sbjct 45618 TAATGGCATTAACTATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTT 45677 Query 73 TTACCTCTTTAAGATAAA----TAAACTTATTTAAAGAGTTAAATATAAAATACCACAGC 128 | || ||| |||||| | |||| ||||||||| |||||||||||||||| Sbjct 45678 ATTCCCCTTCAAGATATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGC 45730 Query 129 CACGAGAAATCGTATAAAGCTATGGTAGGTCTAGGATAGAAA 170 ||| |||||| ||||||||||| ||| ||||||||||||| Sbjct 45731 CACAAGAAATTATATAAAGCTATAGTAAATCTAGGATAGAAA 45772 >seq171 Length=184467 Score = 93.3 bits (102), Expect = 4e-16 Identities = 117/157 (75%), Gaps = 14/157 (9%) Strand=Plus/Minus Query 23 TACCTATAGCAATATATTTCTAGCTCTATAAC---TAGTCCTATATAT-TATTTTTACCT 78 |||||||||||||||||| | || ||||||| | || ||||| ||||| ||||| Sbjct 158932 TACCTATAGCAATATATTACCAGTTCTATAATAGTTGGTGCTATAACCCTATTTATACCT 158873 Query 79 CTTTAAGATAAA--TAAACTTATTTAAAGAGTTAAATATAAAATACCACAGCCACGAGAA 136 ||| | |||| | || || | |||| || ||||||||||||||||||| |||| Sbjct 158872 CTTCAGGATATAAGTATACAATTATAAA-----AACTATAAAATACCACAGCCACAAGAA 158818 Query 137 ATC---GTATAAAGCTATGGTAGGTCTAGGATAGAAA 170 ||| ||| ||||||| || ||||||||||||| Sbjct 158817 ATCATATTATGAAGCTATATTAAATCTAGGATAGAAA 158781 >seq1668 Length=82418 Score = 84.2 bits (92), Expect = 2e-13 Identities = 79/101 (78%), Gaps = 11/101 (11%) Strand=Plus/Minus Query 74 TACCTCTTTAAGATAAA----TAAACTTATTTAAAGAGTTAAATATAAAATACCACAGCC 129 |||||||| |||||| | |||| ||||| ||| |||||||||||||| || Sbjct 67450 TACCTCTTCAAGATATAAGTATAAAATTATTAAAAC-------TATAAAATACCACACCC 67398 Query 130 ACGAGAAATCGTATAAAGCTATGGTAGGTCTAGGATAGAAA 170 || ||||||| ||||||||||| ||| ||||||||||||| Sbjct 67397 ACAAGAAATCATATAAAGCTATAGTAAATCTAGGATAGAAA 67357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5192176249218