Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008839.1 Length=1750 Score E Sequences producing significant alignments: (Bits) Value seq2447 116 4e-23 seq9855 107 2e-20 seq6422 102 9e-19 >seq2447 Length=64305 Score = 116 bits (128), Expect = 4e-23 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 1507 TCTATCCTAGATTTGGTATAGC---ATATTATTTTTTGTGGCTGTGGTATTTTATATATA 1563 ||||| ||||||||| |||||| ||| |||| ||||||||||||| ||||||| | Sbjct 3141 TCTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAA 3200 Query 1564 ACTCTTTAAATAAAGTTAATTATCTTAAAGAGGTATATATAAGATATAATGATAGCTATA 1623 ||||||||||||| ||| ||||||||||||||||| ||| || ||| |||||||| Sbjct 3201 ACTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATA 3260 Query 1624 TACCTAGGAA 1633 || ||| || Sbjct 3261 TAGTTAGAAA 3270 >seq9855 Length=15086 Score = 107 bits (118), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 1484 TGTGGCGACTATGACTGACAAATTCTA-TCCTAGATTTGGTATAGC---ATATTATTTTT 1539 |||||| | || ||| ||| ||||| | ||||| || ||||| ||||||||| Sbjct 3271 TGTGGCAAACGTGGCTGCCAA-TTCTAGTACTAGACTTACCATAGCTCTATATTATTTCC 3213 Query 1540 TGTGGCTGTGGTATTTTATATATAACTCTTTAAATAAAGTTAATTATCTTAAAGAGGTAT 1599 |||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||| Sbjct 3212 CGTGGCTGTGGTATTTTATATGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTAT 3153 Query 1600 ATATAAGATATAATGATAGCTA 1621 | ||| ||||| || ||||| Sbjct 3152 AAATAGCATATAGTGTAAGCTA 3131 >seq6422 Length=30189 Score = 102 bits (112), Expect = 9e-19 Identities = 91/112 (81%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 1504 AATTCTA-TCCTAGATTTGGTATAGC---ATATTATTTTTTGTGGCTGTGGTATTTTATA 1559 ||||||| | ||||| || ||||| ||||||||| ||||||||||||||||||| Sbjct 21236 AATTCTAGTACTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATA 21177 Query 1560 TATAACTCTTTAAATAAAGTTAATTATCTTAAAGAGGTATATATAAGATATA 1611 | |||||||||| |||| ||| ||||||||||||||||| ||| ||||| Sbjct 21176 TGTAACTCTTTACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATA 21125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5489694666456