Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008840.1 Length=1859 Score E Sequences producing significant alignments: (Bits) Value seq6422 158 1e-35 seq9855 152 6e-34 seq2447 132 6e-28 seq1896 91.5 2e-15 >seq6422 Length=30189 Score = 158 bits (174), Expect = 1e-35 Identities = 248/343 (72%), Gaps = 13/343 (4%) Strand=Plus/Plus Query 186 ACCCTT-AAGGTCAGCTTCTCGAAAC-ATGATCAATCGAATTCCCTTGGCCAAGAAGAGT 243 |||||| ||||||| | || || | | | ||| ||| ||||| | ||||| || | Sbjct 20896 ACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCA-TCGGATTCCTCGCGTCAAGACGAAT 20954 Query 244 CCAACGAACCCAAGATCATTCCAAAATTCCCACTGGGCGTGGCCGAATTGAA--TGGTGG 301 |||||| ||| | || | ||||| | ||||| || |||| | ||| |||||| Sbjct 20955 CCAACGGGTCCATGGTCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGG 21014 Query 302 CGGGCGTGGCCGGCATTTGCTATACTACCTCACCTTATATTTATACTATCGATC---ATA 358 |||| ||||| | | | || |||||| ||||| | ||||||| | ||| Sbjct 21015 CGGGTGTGGCAGCCCAGATC-ATCTCACCTCAGCTTATGCT-ATACTATATTTTCATATA 21072 Query 359 GTCTATATTGGTAATGCTC-ATAGCTATGAATTCCTAGACATATAGCTATTACTATATCC 417 | |||||| |||| | ||||| || ||| |||| | ||||| |||||||| | Sbjct 21073 ACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTATACTATATGC 21131 Query 418 TATTTTTACCTCTTTAAGATATATAAACTTATTGAAAGAGTTACATATAAGATACCACAG 477 ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 21132 TATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAG 21191 Query 478 CCATGAGAAATATCATATTGCTATAGTAAATCTAGGA-TAGAA 519 ||| | |||||| ||| ||||| |||| ||||| | ||||| Sbjct 21192 CCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAA 21234 >seq9855 Length=15086 Score = 152 bits (168), Expect = 6e-34 Identities = 247/343 (72%), Gaps = 13/343 (4%) Strand=Plus/Plus Query 186 ACCCTT-AAGGTCAGCTTCTCGAAAC-ATGATCAATCGAATTCCCTTGGCCAAGAAGAGT 243 |||||| ||||||| | || || | | | ||| ||| ||||| | ||||| || | Sbjct 2912 ACCCTTCAAGGTCACCCTCCCGTGATTAGGCTCA-TCGGATTCCTCGCGTCAAGACGAAT 2970 Query 244 CCAACGAACCCAAGATCATTCCAAAATTCCCACTGGGCGTGGCCGAATTGAA--TGGTGG 301 |||||| ||| | || | ||||| | ||||| || |||| | ||| |||||| Sbjct 2971 CCAACGGGTCCATGGTCGACCAAAAATGGCTACTGGAAGTCCCCGATTGGAAATTGGTGG 3030 Query 302 CGGGCGTGGCCGGCATTTGCTATACTACCTCACCTTATATTTATACTATCGATC---ATA 358 |||| ||||| | | | || |||||| ||||| | ||||||| | ||| Sbjct 3031 CGGGTGTGGCAGCCCAGATCATCAC-ACCTCAGCTTATGCT-ATACTATATTTTCATATA 3088 Query 359 GTCTATATTGGTAATGCTC-ATAGCTATGAATTCCTAGACATATAGCTATTACTATATCC 417 | |||||| |||| | ||||| || ||| |||| | ||||| ||||||| | Sbjct 3089 ACTTTTATTGGCTATGCCCTATAGCAATACATTTCTAGCTGT-TAGCTTACACTATATGC 3147 Query 418 TATTTTTACCTCTTTAAGATATATAAACTTATTGAAAGAGTTACATATAAGATACCACAG 477 ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 3148 TATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACCACAG 3207 Query 478 CCATGAGAAATATCATATTGCTATAGTAAATCTAGGA-TAGAA 519 ||| | |||||| ||| ||||| |||| ||||| | ||||| Sbjct 3208 CCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAA 3250 >seq2447 Length=64305 Score = 132 bits (146), Expect = 6e-28 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 398 ATATAGCTATTACTATATCCTATTTTTACCTCTTTAAGATATATAAACTTATTGAAAGAG 457 ||||||||| | |||| |||||||| ||||||||||||||||||||||||||| |||||| Sbjct 3261 ATATAGCTAGTTCTATTTCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAG 3202 Query 458 TTACATATAAGATACCACAGCCATGAGAAATATCATATTGCTATAGTAAATCTAGGATAG 517 || |||||| |||||||||| |||||| ||| ||||||| |||||||| |||| Sbjct 3201 TTTGATATAAATAACCACAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAG 3142 Query 518 A 518 | Sbjct 3141 A 3141 >seq1896 Length=105120 Score = 91.5 bits (100), Expect = 2e-15 Identities = 113/154 (73%), Gaps = 12/154 (8%) Strand=Plus/Plus Query 378 ATAGCTATGAATTCCTAGACATATAGCTATTACTATATCC-TATTTTTACCTCTTTAAGA 436 ||||| || ||| ||| | |||||| | ||||| || ||||| | || ||| |||| Sbjct 45632 ATAGCAATTTATTATTAGGTCTCTAGCTAGTGCTATAACCCTATTTATTCCCCTTCAAGA 45691 Query 437 TATA----TAAACTTATTGAAAGAGTTACATATAAGATACCACAGCCATGAGAAATATCA 492 |||| |||| ||||| ||| ||||| |||||||||||| |||||| | Sbjct 45692 TATAAGTATAAAATTATTTAAAC-------TATAAAATACCACAGCCACAAGAAATTATA 45744 Query 493 TATTGCTATAGTAAATCTAGGATAGAAAGTATCT 526 || |||||||||||||||||||||||| |||| Sbjct 45745 TAAAGCTATAGTAAATCTAGGATAGAAATGATCT 45778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5838399047950