Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008841.1 Length=1916 Score E Sequences producing significant alignments: (Bits) Value seq1896 111 2e-21 seq16437 86.0 8e-14 seq171 78.8 1e-11 >seq1896 Length=105120 Score = 111 bits (122), Expect = 2e-21 Identities = 123/163 (75%), Gaps = 12/163 (7%) Strand=Plus/Minus Query 554 ATTACTATCCTAGATTTATTATAGCTTAATATAATTTGCCGTGGCTTTGGtattttatat 613 ||| |||||||||||||| |||||||| ||||||||| |||||| |||||||||||| Sbjct 45773 ATTTCTATCCTAGATTTACTATAGCTTTATATAATTTCTTGTGGCTGTGGTATTTTATA- 45715 Query 614 ataactctttaaataaattta----tatatcttaaagaggtataaatagtaatataaGAC 669 ||||||||| |||| |||||||| ||| || |||||||| |||| || Sbjct 45714 ------GTTTAAATAATTTTATACTTATATCTTGAAGGGGAATAAATAGGGTTATAGCAC 45661 Query 670 TAGCTATAGAGCTAGAAGATGTATAGCTGTAGATAAAGACATT 712 |||||| ||| ||| | || || ||| ||| ||| | |||| Sbjct 45660 TAGCTAGAGACCTA-ATAATAAATTGCTATAGTTAATGCCATT 45619 >seq16437 Length=3918 Score = 86.0 bits (94), Expect = 8e-14 Identities = 119/159 (75%), Gaps = 21/159 (13%) Strand=Plus/Minus Query 635 tatatcttaaagaggtataaatagtaatataaGACTAGCTATAGAGCTAGAAGATGTAT- 693 |||||||||||||||||||||||| || ||| |||||||||| || ||||| |||||| Sbjct 1163 TATATCTTAAAGAGGTATAAATAGGAA-ATAGAACTAGCTATATAGTTAGAA-ATGTATT 1106 Query 694 ------AGCTGTAG--ATAAAGACATTGAGTATTTAATAAAGGTATAGTATGAAAATAAG 745 ||| |||| ||||| || |||| | |||| |||||| || ||||| Sbjct 1105 ATAATAAGC-GTAGTCATAAAAGTAT--AGTAAATTATAA-----TAGTAT-AATATAAG 1055 Query 746 CTGAGGTAAGACTGGAATTACCCACCACACCCGCCACAC 784 ||||||| ||||||| ||||| || |||| || |||| Sbjct 1054 CTGAGGTTGGACTGGATATACCCGCC-CACCTGCTACAC 1017 >seq171 Length=184467 Score = 78.8 bits (86), Expect = 1e-11 Identities = 113/156 (72%), Gaps = 10/156 (6%) Strand=Plus/Plus Query 555 TTACTATCCTAGATTTATTATAGCT---TAATATAATTTGCCGTGGCTTTGGtattttat 611 || |||||||||||||| ||||||| |||||| |||| |||||| ||||||||||| Sbjct 158781 TTTCTATCCTAGATTTAATATAGCTTCATAATATGATTTCTTGTGGCTGTGGTATTTTAT 158840 Query 612 atataactctttaaataaatttatatatcttaaagaggtataaatagtaatataaGACTA 671 | | | | ||| | || |||||| | ||||||||||||||| |||| || | Sbjct 158841 AGTT---TTTATAATTGTATACTTATATCCTGAAGAGGTATAAATAGGGTTATAGCACCA 158897 Query 672 GC---TATAGAGCTAGAAGATGTATAGCTGTAGATA 704 | |||||| || | | || ||| ||| ||| || Sbjct 158898 ACTATTATAGAACTGGTA-ATATATTGCTATAGGTA 158932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6020749045612