Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008843.1 Length=1945 Score E Sequences producing significant alignments: (Bits) Value seq6422 123 3e-25 seq2447 122 1e-24 seq9855 118 1e-23 >seq6422 Length=30189 Score = 123 bits (136), Expect = 3e-25 Identities = 169/230 (73%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 782 CTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAACTCTT 841 ||||| |||| ||||| ||| |||||| | |||||||||| |||||||| |||||||| Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167 Query 842 TGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATATGCCTG 901 | ||||||||| ||||||||||||||| |||||| |||||| | ||||| | || Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108 Query 902 GAAGTATATAGCTATA-AGCATTACTAGTAAAGACTATGAGACTATGGTATACAGTATAA 960 ||| | ||| |||||| |||| | | |||| ||| || ||| ||||| | Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA-----AAATATAGTAT-A 21054 Query 961 ATATAAGCTGTGGT-AGTATAGCGGATGGCAGCCACACCTGCCACCAGTT 1009 |||||||| ||| || | | | ||| |||||||| ||||||| || Sbjct 21053 GCATAAGCTGAGGTGAGATGATCTG--GGCTGCCACACCCGCCACCAATT 21006 >seq2447 Length=64305 Score = 122 bits (134), Expect = 1e-24 Identities = 99/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 777 CTATCCTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAA 836 |||| |||||||| ||||||| ||| ||||| |||||||||| ||||||| || Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201 Query 837 CTCTTTGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATAT 896 |||||| |||||||||| ||||||||||||||| |||||||| |||| | ||||||||| Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261 >seq9855 Length=15086 Score = 118 bits (130), Expect = 1e-23 Identities = 168/230 (73%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 782 CTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAACTCTT 841 ||||| |||| ||||| ||| |||||| | |||||||||| |||||||| |||||||| Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183 Query 842 TGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATATGCCTG 901 | ||||||||| ||||||||||||||| |||||| |||||| ||||| | || Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124 Query 902 GAAGTATATAGCTATA-AGCATTACTAGTAAAGACTATGAGACTATGGTATACAGTATAA 960 ||| | ||| |||||| |||| | | |||| ||| || ||| ||||| | Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA-----AAATATAGTAT-A 3070 Query 961 ATATAAGCTGTGGTAGTAT-AGCGGATGGCAGCCACACCTGCCACCAGTT 1009 |||||||| ||| || | | | ||| |||||||| ||||||| || Sbjct 3069 GCATAAGCTGAGGTGTGATGATCTG--GGCTGCCACACCCGCCACCAATT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6113523605826