Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11]
25,801 sequences; 638,207,720 total letters
Query= NC_008843.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
seq6422 123 3e-25
seq2447 122 1e-24
seq9855 118 1e-23
>seq6422
Length=30189
Score = 123 bits (136), Expect = 3e-25
Identities = 169/230 (73%), Gaps = 11/230 (5%)
Strand=Plus/Minus
Query 782 CTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAACTCTT 841
||||| |||| ||||| ||| |||||| | |||||||||| |||||||| ||||||||
Sbjct 21226 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 21167
Query 842 TGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATATGCCTG 901
| ||||||||| ||||||||||||||| |||||| |||||| | ||||| | ||
Sbjct 21166 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTATAAGCTA-ACAGCTA 21108
Query 902 GAAGTATATAGCTATA-AGCATTACTAGTAAAGACTATGAGACTATGGTATACAGTATAA 960
||| | ||| |||||| |||| | | |||| ||| || ||| ||||| |
Sbjct 21107 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA-----AAATATAGTAT-A 21054
Query 961 ATATAAGCTGTGGT-AGTATAGCGGATGGCAGCCACACCTGCCACCAGTT 1009
|||||||| ||| || | | | ||| |||||||| ||||||| ||
Sbjct 21053 GCATAAGCTGAGGTGAGATGATCTG--GGCTGCCACACCCGCCACCAATT 21006
>seq2447
Length=64305
Score = 122 bits (134), Expect = 1e-24
Identities = 99/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 777 CTATCCTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAA 836
|||| |||||||| ||||||| ||| ||||| |||||||||| ||||||| ||
Sbjct 3142 CTATTCTAGATTTGCTATAGCTCTATACGATTTCTTGTGGCTGTGGTTATTTATATCAAA 3201
Query 837 CTCTTTGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATAT 896
|||||| |||||||||| ||||||||||||||| |||||||| |||| | |||||||||
Sbjct 3202 CTCTTTAAATAAGTTTATATATCTTAAAGAGGTATAAATAGGAAATAGAACTAGCTATAT 3261
>seq9855
Length=15086
Score = 118 bits (130), Expect = 1e-23
Identities = 168/230 (73%), Gaps = 11/230 (5%)
Strand=Plus/Minus
Query 782 CTAGATTTACTATAGCAATATGATATTTCACATGGCTGTGGTGTTTTATATATAACTCTT 841
||||| |||| ||||| ||| |||||| | |||||||||| |||||||| ||||||||
Sbjct 3242 CTAGACTTACCATAGCTCTATATTATTTCCCGTGGCTGTGGTATTTTATATGTAACTCTT 3183
Query 842 TGAATAAGTTTAAGTATCTTAAAGAGGTAAAAATAGGATATAGGAATAGCTATATGCCTG 901
| ||||||||| ||||||||||||||| |||||| |||||| ||||| | ||
Sbjct 3182 TACATAAGTTTATATATCTTAAAGAGGTATAAATAGCATATAGTGTAAGCTA-ACAGCTA 3124
Query 902 GAAGTATATAGCTATA-AGCATTACTAGTAAAGACTATGAGACTATGGTATACAGTATAA 960
||| | ||| |||||| |||| | | |||| ||| || ||| ||||| |
Sbjct 3123 GAAATGTATTGCTATAGGGCATAGCCAATAAAAGTTATATGA-----AAATATAGTAT-A 3070
Query 961 ATATAAGCTGTGGTAGTAT-AGCGGATGGCAGCCACACCTGCCACCAGTT 1009
|||||||| ||| || | | | ||| |||||||| ||||||| ||
Sbjct 3069 GCATAAGCTGAGGTGTGATGATCTG--GGCTGCCACACCCGCCACCAATT 3022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6113523605826
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |