Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Operophtera_20brumata_20[genbank_20GCA_5F001266575.1_202015-08-11] 25,801 sequences; 638,207,720 total letters Query= NC_008844.1 Length=1948 Score E Sequences producing significant alignments: (Bits) Value seq9855 123 3e-25 seq6422 120 4e-24 seq2447 104 3e-19 >seq9855 Length=15086 Score = 123 bits (136), Expect = 3e-25 Identities = 105/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 629 ATCCTATTTATACCTCTTTAAGATAATTAAACTTATTTAAAGAGTTATATATAAAAGACC 688 || |||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||| Sbjct 3144 ATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACC 3203 Query 689 ACAGCCACGGGAAATAATAAAGTTTTATAGGTATTCTAGTATTGCAATGTAGC-GCCACG 747 ||||||||||||||||||| || ||| | | ||||||| | ||| | || |||||| Sbjct 3204 ACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTACTAGAAT-TGGCAGCCACG 3262 Query 748 CTCGCCA 754 | |||| Sbjct 3263 TTTGCCA 3269 >seq6422 Length=30189 Score = 120 bits (132), Expect = 4e-24 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 629 ATCCTATTTATACCTCTTTAAGATAATTAAACTTATTTAAAGAGTTATATATAAAAGACC 688 || |||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||| Sbjct 21128 ATGCTATTTATACCTCTTTAAGATATATAAACTTATGTAAAGAGTTACATATAAAATACC 21187 Query 689 ACAGCCACGGGAAATAATAAAGTTTTATAGGTATTCTAGTA 729 ||||||||||||||||||| || ||| | | ||||||| Sbjct 21188 ACAGCCACGGGAAATAATATAGAGCTATGGTAAGTCTAGTA 21228 >seq2447 Length=64305 Score = 104 bits (114), Expect = 3e-19 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 630 TCCTATTTATACCTCTTTAAGATAATTAAACTTATTTAAAGAGTTATATATAAAAGACCA 689 |||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| Sbjct 3244 TCCTATTTATACCTCTTTAAGATATATAAACTTATTTAAAGAGTTTGATATAAATAACCA 3185 Query 690 CAGCCACGGGAAATAATAAAGTTTTATAGGTATTCTAGTATTGCAATGTAGCGCCAC 746 ||||||| ||||| || || ||||| | ||||| || | ||| |||||| Sbjct 3184 CAGCCACAAGAAATCGTATAGAGCTATAGCAAATCTAGAATAGAGATGGTCCGCCAC 3128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6123120974124